DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42495 and Tmem42

DIOPT Version :10

Sequence 1:NP_001163464.1 Gene:CG42495 / 8674004 FlyBaseID:FBgn0260027 Length:142 Species:Drosophila melanogaster
Sequence 2:NP_001178815.1 Gene:Tmem42 / 363171 RGDID:1307118 Length:157 Species:Rattus norvegicus


Alignment Length:114 Identity:33/114 - (28%)
Similarity:51/114 - (44%) Gaps:17/114 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 LVAGSFAAAGSFFGKLPSHLSAQKLLNTSQINEDFSYLEIALLQLLPLVLMVTCNVCNLRFFLKA 75
            :.||:|.|..:         :|.||...||:|       |.|. :|.::.|.:.|.....||.:.
  Rat    44 MCAGAFGALAA---------AAAKLAFGSQVN-------IGLC-VLGIIAMASTNSLMWTFFSRG 91

  Fly    76 LQMTEQTLTCVVLTAASNYVLSFVLGALVYREPLTVLSGIGITLILAGL 124
            |..:..:....|....||.:.|.:||.::|.|...:|...|:.|||.||
  Rat    92 LSFSMSSAIASVTVTFSNILCSAILGYVLYGECQEILWWGGVFLILCGL 140

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42495NP_001163464.1 TMEM234 <71..127 CDD:481150 18/54 (33%)
Tmem42NP_001178815.1 None

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