DRSC/TRiP Functional Genomics Resources

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Protein Alignment LGR5 and kek3

DIOPT Version :10

Sequence 1:NP_003658.1 Gene:LGR5 / 8549 HGNCID:4504 Length:907 Species:Homo sapiens
Sequence 2:NP_523575.1 Gene:kek3 / 34912 FlyBaseID:FBgn0028370 Length:1021 Species:Drosophila melanogaster


Alignment Length:212 Identity:73/212 - (34%)
Similarity:103/212 - (48%) Gaps:13/212 - (6%)


- Green bases have known domain annotations that are detailed below.


Human    10 LSLPVLLQLATGGSSPRSGVLLRGCPTHCHCE-PDGRMLLRVDCSDLGLSELPSNLSVFTSYLDL 73
            |.|.:||.|....|  :.|.|...||..|.|: ..|:.  .|.|.:..|:.:|..|...|..|||
  Fly    57 LHLHLLLWLLCCCS--QLGQLRAECPAVCECKWKSGKE--SVLCLNANLTHIPQPLDAGTQLLDL 117

Human    74 SMNNISQLLPN---PLPSLRFLEELRLAGNALTYIPKGAFTGLYSLKVLMLQNNQLRHVPTEALQ 135
            |.|.| ||:|:   ....|..|:::.||...|..|.:.||..|.:|..|.|..|.|..:|:.||.
  Fly   118 SGNEI-QLIPDDSFATAQLLNLQKVYLARCHLRLIERHAFRKLINLVELDLSQNLLSAIPSLALY 181

Human   136 NLRSLQSLRLDANHISYVPPSCFSGLHSLRHLWLDDNALTEIPVQAFRSL-SALQAMTLALNKIH 199
            ::..|:.|||..|.|..||...|..:..|..|.|.|..|:.|.|:||..| |:|:.:.|..|::.
  Fly   182 HVSELRELRLSGNPILRVPDDAFGHVPQLVKLELSDCRLSHIAVRAFAGLESSLEWLKLDGNRLS 246

Human   200 HIPDYAFGNLSSLVVLH 216
            .:..   |.::||..||
  Fly   247 EVRS---GTITSLASLH 260

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LGR5NP_003658.1 LRRNT 33..65 CDD:396168 9/32 (28%)
leucine-rich repeat 68..91 CDD:275380 11/25 (44%)
LRR 92..477 CDD:443914 44/126 (35%)
leucine-rich repeat 92..115 CDD:275380 8/22 (36%)
leucine-rich repeat 116..139 CDD:275380 8/22 (36%)
leucine-rich repeat 140..163 CDD:275380 9/22 (41%)
leucine-rich repeat 164..187 CDD:275380 10/23 (43%)
leucine-rich repeat 188..211 CDD:275380 4/22 (18%)
leucine-rich repeat 212..235 CDD:275380 3/5 (60%)
leucine-rich repeat 236..258 CDD:275380
leucine-rich repeat 259..282 CDD:275380
leucine-rich repeat 283..304 CDD:275380
leucine-rich repeat 307..353 CDD:275378
leucine-rich repeat 354..375 CDD:275378
leucine-rich repeat 376..389 CDD:275378
leucine-rich repeat 400..423 CDD:275378
leucine-rich repeat 445..459 CDD:275378
7tmA_LGR5 558..831 CDD:320485
TM helix 1 559..585 CDD:320485
TM helix 2 592..617 CDD:320485
TM helix 3 637..667 CDD:320485
TM helix 4 679..701 CDD:320485
TM helix 5 721..750 CDD:320485
TM helix 6 759..789 CDD:320485
TM helix 7 799..824 CDD:320485
kek3NP_523575.1 LRR <98..>267 CDD:443914 58/167 (35%)
leucine-rich repeat 112..137 CDD:275380 11/25 (44%)
leucine-rich repeat 138..161 CDD:275380 8/22 (36%)
leucine-rich repeat 162..185 CDD:275380 8/22 (36%)
leucine-rich repeat 186..209 CDD:275380 9/22 (41%)
leucine-rich repeat 210..234 CDD:275380 10/23 (43%)
leucine-rich repeat 235..258 CDD:275380 6/25 (24%)
LRRCT 267..316 CDD:214507
Ig 331..428 CDD:472250
Ig strand B 335..339 CDD:409562
Ig strand C 348..352 CDD:409562
Ig strand E 394..398 CDD:409562
Ig strand F 408..413 CDD:409562
Ig strand G 421..424 CDD:409562
Blue background indicates that the domain is not in the aligned region.

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