DRSC/TRiP Functional Genomics Resources

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Protein Alignment MAP1LC3B and Atg8a

DIOPT Version :10

Sequence 1:NP_073729.1 Gene:MAP1LC3B / 81631 HGNCID:13352 Length:125 Species:Homo sapiens
Sequence 2:NP_727447.1 Gene:Atg8a / 32001 FlyBaseID:FBgn0052672 Length:121 Species:Drosophila melanogaster


Alignment Length:115 Identity:36/115 - (31%)
Similarity:66/115 - (57%) Gaps:2/115 - (1%)


- Green bases have known domain annotations that are detailed below.


Human     7 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRL 71
            :|:...||:|..:...||.::|.::|||:|: ..:.::..|||.|:|||..:.:.:...:||:|:
  Fly     5 YKEEHAFEKRRAEGDKIRRKYPDRVPVIVEK-APKARIGDLDKKKYLVPSDLTVGQFYFLIRKRI 68

Human    72 QLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFGM 121
            .|....|.|..|| :.:...|..:..:|:...:||.|||:.|:.:..:||
  Fly    69 HLRPEDALFFFVN-NVIPPTSATMGSLYQEHHEEDYFLYIAYSDENVYGM 117

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MAP1LC3BNP_073729.1 Ubl_ATG8_MAP1LC3B 5..119 CDD:340755 34/111 (31%)
Atg8aNP_727447.1 Ubl_ATG8_GABARAP 2..116 CDD:340752 34/112 (30%)

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