Sequence 1: | NP_001317189.1 | Gene: | SCN8A / 6334 | HGNCID: | 10596 | Length: | 1980 | Species: | Homo sapiens |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_012826714.1 | Gene: | scn3a / 100125099 | XenbaseID: | XB-GENE-5812330 | Length: | 2019 | Species: | Xenopus tropicalis |
Alignment Length: | 2036 | Identity: | 1507/2037 (74%) |
---|---|---|---|
Similarity: | 1691/2037 (83%) | Gaps: | 75/2037 (4%) |
Human 1 MAARLLAPPGPDSFKPFTPESLANIERRIAESKLKKPPKADGSHREDDEDSKPKPNSDLEAGKSL 65
Human 66 PFIYGDIPQGLVAVPLEDFDPYYLTQKTFVVLNRGKTLFRFSATPALYILSPFNLIRRIAIKILI 130
Human 131 HSVFSMIIMCTILTNCVFMTFSNPPDWSKNVEYTFTGIYTFESLVKIIARGFCIDGFTFLRDPWN 195
Human 196 WLDFSVIMMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVMILTVF 260
Human 261 CLSVFALIGLQLFMGNLRNKCVVWPIN--------FNES---YLENGTKGFDWEEYINNKTNFYT 314
Human 315 VPGMLEPLLCGNSSDAGQCPEGYQCMKAGRNPNYGYTSFDTFSWAFLALFRLMTQDYWENLYQLT 379
Human 380 LRAAGKTYMIFFVLVIFVGSFYLVNLILAVVAMAYEEQNQATLEEAEQKEAEFKAMLEQLKKQQE 444
Human 445 EAQAAAMATSAGTVSEDAIEEEGEEG-GGSPRSSSEISKLSSKSAKERRNRRKKRKQKELSEGEE 508
Human 509 KGDPEKVFKSESEDGMRRKAFR--LPDNRI--GRKFSIMNQSLLSIPGSPFLSRHNSKSSIFSFR 569
Human 570 GPGRFRDPGSENEFADDEHSTVEESEGRRDSLFIPIRARERRSSYSGYSGYSQGSRSSRIFPSLR 634
Human 635 RSVKRNSTVDCNGVVSLIGGPG--SHIGGRLLPE------------ATTEVEIKKKGPGSLLVSM 685
Human 686 DQLASYGRKDRINSIMSVVTNTLVEELEESQRKCPPCWYKFANTFLIWECHPYWIKLKEIVNLIV 750
Human 751 MDPFVDLAITICIVLNTLFMAMEHHPMTPQFEHVLAVGNLVFTGIFTAEMFLKLIAMDPYYYFQE 815
Human 816 GWNIFDGFIVSLSLMELSLADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTL 880
Human 881 VLAIIVFIFAVVGMQLFGKSYKECVCKI-NQDCELPRWHMHDFFHSFLIVFRVLCGEWIETMWDC 944
Human 945 MEVAGQAMCLIVFMMVMVIGNLVVLNLFLALLLSSFSADNLAATDDDGEMNNLQISVIRIKKGVA 1009
Human 1010 WTKLKVHAFMQAHF--KQREADEVKPLDELYEKKANCIANHTGADIHRNGDFQKNGNGT--TSGI 1070
Human 1071 GSSVEKYIIDE-DHMSFINNPNLTVRVPIAVGESDFENLNTEDVSSESDPEGSKDKLDDTSSSEG 1134
Human 1135 STIDIKP--EVEEVPVEQPEEYLDPDACFTEGCVQRFKCCQVNIEEGLGKSWWILRKTCFLIVEH 1197
Human 1198 NWFETFIIFMILLSSGALAFEDIYIEQRKTIRTILEYADKVFTYIFILEMLLKWTAYGFVKFFTN 1262
Human 1263 AWCWLDFLIVAVSLVSLIANALGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSI 1327
Human 1328 MNVLLVCLIFWLIFSIMGVNLFAGKYHYCFNETSEIRFEIEDVNNKTECEKLMEGNNTEIRWKNV 1392
Human 1393 KINFDNVGAGYLALLQVATFKGWMDIMYAAVDSRKPDEQPKYEDNIYMYIYFVIFIIFGSFFTLN 1457
Human 1458 LFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPLNKIQGIVFDFVTQQ 1522
Human 1523 AFDIVIMMLICLNMVTMMVETDTQSKQMENILYWINLVFVIFFTCECVLKMFALRHYYFTIGWNI 1587
Human 1588 FDFVVVILSIVGMFLADIIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALF 1652
Human 1653 NIGLLLFLVMFIFSIFGMSNFAYVKHEAGIDDMFNFETFGNSMICLFQITTSAGWDGLLLPILNR 1717
Human 1718 -PPDCSLDKEHPGSGFKGDCGNPSVGIFFFVSYIIISFLIVVNMYIAIILENFSVATEESADPLS 1781
Human 1782 EDDFETFYEIWEKFDPDATQFIEYCKLADFADALEHPLRVPKPNTIELIAMDLPMVSGDRIHCLD 1846
Human 1847 ILFAFTKRVLGDSGELDILRQQMEERFVASNPSKVSYEPITTTLRRKQEEVSAVVLQRAYRGHLA 1911
Human 1912 RRG------------------FICKKTTSNKLENGGTHREKKESTPSTASLPSYDSVTKPEKEKQ 1958
Human 1959 QRAEEGRRERAKRQKEVRESK 1979 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
SCN8A | NP_001317189.1 | I. {ECO:0000305} | 114..442 | 278/339 (82%) | |
Ion_trans | 131..421 | CDD:306908 | 248/301 (82%) | ||
Na_trans_cytopl | 502..688 | CDD:314757 | 96/204 (47%) | ||
II. {ECO:0000305} | 735..1007 | 238/273 (87%) | |||
Ion_trans | 752..965 | CDD:306908 | 194/214 (91%) | ||
Na_trans_assoc | 991..1192 | CDD:310839 | 124/208 (60%) | ||
III. {ECO:0000305} | 1180..1495 | 273/315 (87%) | |||
Ion_trans | 1197..1473 | CDD:306908 | 238/276 (86%) | ||
Na_channel_gate | 1465..1517 | CDD:240441 | 48/52 (92%) | ||
IV. {ECO:0000305} | 1504..1801 | 252/298 (85%) | |||
Ion_trans | 1522..1776 | CDD:306908 | 221/255 (87%) | ||
GPHH | 1780..1843 | CDD:318993 | 49/63 (78%) | ||
IQ | 1894..1915 | CDD:197470 | 11/39 (28%) | ||
scn3a | XP_012826714.1 | Ion_trans | 151..430 | CDD:278921 | 230/279 (82%) |
Na_trans_cytopl | 512..627 | CDD:288761 | 61/123 (50%) | ||
Ion_trans | 786..982 | CDD:278921 | 176/196 (90%) | ||
Na_trans_assoc | 1008..1216 | CDD:284034 | 124/208 (60%) | ||
Ion_trans | 1239..1496 | CDD:278921 | 221/258 (86%) | ||
Na_channel_gate | 1488..1540 | CDD:240441 | 48/52 (92%) | ||
Ion_trans | 1562..1800 | CDD:278921 | 207/238 (87%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | E1_KOG2301 | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | D37221at33208 | |||
OrthoFinder | 1 | 1.000 | FOG0000322 | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.910 |