Sequence 1: | NP_001159435.1 | Gene: | SCN1A / 6323 | HGNCID: | 10585 | Length: | 2009 | Species: | Homo sapiens |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_011733.3 | Gene: | CCH1 / 853131 | SGDID: | S000003449 | Length: | 2039 | Species: | Saccharomyces cerevisiae |
Alignment Length: | 2158 | Identity: | 404/2159 (19%) |
---|---|---|---|
Similarity: | 706/2159 (33%) | Gaps: | 809/2159 (37%) |
Human 13 SFNFFTRESLAAIERRIAEEKAKNPKP------------DKKDD------------DENG----- 48
Human 49 ------PKPNSDL--EAG----KNLPFIY----------GDI--PPE-----MVSEPLE------ 78
Human 79 ----------DLDPYYINKKTFIVLNKGKAIFRF--------SATSALY-----ILTPFNPLR-K 119
Human 120 IAIKILVHSLFSML---------IMCTILT----NCVFM-TMSNPPDWTKNVEYTFTGIYTFESL 170
Human 171 IKIIARGFC------------------------------------LEDF---------------- 183
Human 184 -------------------------TFLRDPWNWLDFTVITFAYVTEFVDLGNV---SALRTFR- 219
Human 220 --VLRALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCIQWPP 282
Human 283 TNASLEEHSIEKNITVNYNGTLINETVFEFDWKSYIQDSRYHYFLEGFLDALLC----------- 336
Human 337 -GNSSDAGQCPEGYMCVKAGRNPNYGYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYM 400
Human 401 IFFVLVIFLGSFYLINLILAVVAMAYEEQNQATLEEAEQKEAEFQQMIEQLKKQQEAAQQAATAT 465
Human 466 ASEHSREPSAAGRLSDSSSEASKLSSKSAKERRNRRKKRKQKEQSGGEEKDEDEFQKSESEDSIR 530
Human 531 RKGFRFSIEGNRLT-YEKRYSSPHQSLLSIRGSLFSPRRNSRTSLFSFRGRAKDVGSENDFADDE 594
Human 595 HSTFEDNESRRDSLFVPRRHGERRNSNLSQTSRSSRMLAVFPANGKMHSTVDCNGVVSLVGGPSV 659
Human 660 PTSPVGQLLPEVIIDKPATDDNGTTTETEMRKRRSSSFHVSMDFLEDPSQRQRAMSIASILTNTV 724
Human 725 EELEESRQKCPPCWYKFSNIFLIWDCSPYWLKVKHVVNLVVMDPFVDLAITICIVLNTLFMAMEH 789
Human 790 YPMTDHFNNVLTVGNLVFTGIFTAEMFLKIIAMDPYYYFQEGWNIFDGFIVTLSLVELGLANVEG 854
Human 855 --------LSVL---RSFRLLRVFKLAKS-WPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVV 907
Human 908 GMQLFGKSYKDCVCKIASDCQLPRWHMND-------FFHSFLIVFRVLCGE-WIETMWDCME--- 961
Human 962 -VAGQAMCLTVFMMVMVIGNLVVLNLFLALLLSSFSADNLAATDDDNEMNNLQIAVDRMHKGVAY 1025
Human 1026 VK----RKIYEFIQQSFIR--KQKILDEIKPLDDLNNK----KDSCMSNHTAEIGKDLD------ 1074
Human 1075 ----YLKDVNGTTSGIGTGSSVEKYIIDESDYMSFINNPSLTVTVPIAVGESDFENLNTEDFSSE 1135
Human 1136 SDLEESKEKLNESSSSSEGSTVDIGAPVEEQPVVE-PEETLEPEACFTEGCVQRFKCCQINVEEG 1199
Human 1200 RGKQ------------WWNLRRTCFRIVEHNWFETFIVFMILLSSGALAFEDIYIDQRKTIKTML 1252
Human 1253 ------EYADKVFTYIFILEMLLKWVAYGY----QTYFTNAWCWLDFLIVDVSLVSLTANALGY- 1306
Human 1307 ---SELGAIKSLRTLRALRPLRALSRFEGMRVVVN-ALLGAIPSIMNVLLVCLIFWLIFSIMGVN 1367
Human 1368 LFAGKFYHCINTTTGDRFDIEDVNNHTDCLKLIERNETARW--------KNVKVNFDNVGFGYLS 1424
Human 1425 LLQVATFKGWMDIMYAAVDSRNVELQPKYEESLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQ 1489
Human 1490 KKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIP------------------------------ 1524
Human 1525 --------------RPGN--KFQGMVFDFVTRQVFDISIMILICLNMVTMMVETDDQSEYVTTIL 1573
Human 1574 SRINL-VFIVLFTGECVLKLISLRHYYFTIGWNIFDFVVVILSIVGMFLAELIEKYFVSP---TL 1634
Human 1635 FRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKREV 1699
Human 1700 GIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSKPPDCDPNKVNPGSSVKGDCGNPSVGIF 1764
Human 1765 FFVSYIIISFLVVVNMYIAVILENFSVATEE--SAEPLSEDDFEMFYEVWEKFDPDATQFMEFEK 1827
Human 1828 LSQFAAALEPPLN 1840 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
SCN1A | NP_001159435.1 | I. {ECO:0000305} | 110..454 | 93/454 (20%) | |
Ion_trans | 127..433 | CDD:306908 | 81/415 (20%) | ||
Na_trans_cytopl | 510..705 | CDD:314757 | 16/196 (8%) | ||
II. {ECO:0000305} | 750..1022 | 53/296 (18%) | |||
Ion_trans | 767..980 | CDD:306908 | 37/237 (16%) | ||
Na_trans_assoc | 1006..1213 | CDD:310839 | 47/240 (20%) | ||
III. {ECO:0000305} | 1200..1514 | 78/349 (22%) | |||
Ion_trans | 1217..1492 | CDD:306908 | 67/298 (22%) | ||
Na_channel_gate | 1484..1536 | CDD:240441 | 19/98 (19%) | ||
IV. {ECO:0000305} | 1523..1821 | 79/350 (23%) | |||
Ion_trans | 1540..1796 | CDD:306908 | 61/262 (23%) | ||
S1-S2 loop of repeat IV. {ECO:0000250|UniProtKB:A2APX8} | 1561..1571 | 1/10 (10%) | |||
S3b-S4 loop of repeat IV. {ECO:0000250|UniProtKB:A2APX8} | 1619..1636 | 7/20 (35%) | |||
GPHH | 1800..1863 | CDD:318993 | 11/42 (26%) | ||
CCH1 | NP_011733.3 | Ion_trans | 486..722 | CDD:278921 | 58/274 (21%) |
Ion_trans | 795..1010 | CDD:278921 | 50/310 (16%) | ||
Ion_trans | 1228..1480 | CDD:278921 | 61/272 (22%) | ||
Ion_trans | 1566..1776 | CDD:278921 | 63/262 (24%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | E1_KOG2301 | |||
Hieranoid | 1 | 1.000 | ||||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 319 | 1.000 | Inparanoid score | I511 |
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | 0.952 | Consistency score | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.860 |