DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fili and Lrrtm1

DIOPT Version :10

Sequence 1:NP_001369108.1 Gene:Fili / 5740472 FlyBaseID:FBgn0085397 Length:789 Species:Drosophila melanogaster
Sequence 2:NP_001382551.1 Gene:Lrrtm1 / 679668 RGDID:1585921 Length:523 Species:Rattus norvegicus


Alignment Length:614 Identity:139/614 - (22%)
Similarity:234/614 - (38%) Gaps:150/614 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 VLLLLLLTLVILPPETTAFCPSKCQCLGGEANSRALCVDAALEDVPIQLNPETKYINLTVNRIRT 87
            |:|.||.....:.|...:.||.:|:|.|......||.:..|..::...|....:|.:|  :.:|.
  Rat    20 VVLCLLGACFQMLPAAPSGCPGQCRCEGRLLYCEALNLTEAPHNLSGLLGLSLRYNSL--SELRA 82

  Fly    88 LEFSLPFYMKLEILDLSQNIIETLGSKNFEYQSELRTLNLSRNLVSSLHKHAFKGLTNLLLLDLS 152
            .:|:  ..|:|..|.|..|.|.::....|:....::.|.||.|.::.|....|:.:.||..:|||
  Rat    83 GQFT--GLMQLTWLYLDHNHICSVQGDAFQKLRRVKELTLSSNQITELANTTFRPMPNLRSVDLS 145

  Fly   153 FNRIETVHPTALSDLASLVELDLTNNNIVSLEDNCFKGMNTLEVLVFRNNRLLDVPASNLWHLHA 217
            :|:::.:.|            ||            |.|:..|..|..|.|.:..||........:
  Rat   146 YNKLQALAP------------DL------------FHGLRKLTTLHMRANAIQFVPVRIFQDCRS 186

  Fly   218 LKSLDMSLNLVEFVRNDSFEGLKELLALSVQGNVMSELDLSAFEGLISLKHLDLSDNNLTMVPTQ 282
            ||.||:..|.::.:..:||.||.:|..|.::.|.:.:::.:.|..||||..|.|..|.:.:| ..
  Rat   187 LKFLDIGYNQLKSLARNSFAGLFKLTELHLEHNDLIKVNFAHFPRLISLNSLCLRRNKVAIV-VS 250

  Fly   283 QLSKLSNLTYLNLGGNRFSQLPAVAFLNLFHLRELHLSRLDFLQRIDSRAFVDNTHLQTLHLNNN 347
            .|..:.||..::|.||.                         ::.::...|....:||:|.|::|
  Rat   251 SLDWVWNLEKMDLSGNE-------------------------IEYMEPHVFETVPYLQSLQLDSN 290

  Fly   348 PQLSDIPMRLFQGNPNILEVYMQSNSLQTLYSAQFPVDQLQKLYLGDNPLQCN---CSLL-WLWR 408
                    ||....|.||      ||.::|.|          :.|..|...|.   |:|. ||  
  Rat   291 --------RLTYIEPRIL------NSWKSLTS----------ITLAGNLWDCGRNVCALASWL-- 329

  Fly   409 LVTGNFEG-VDPGMEHAAGGAVAALAKEADDEELADEATAVASTDDGVAALAAYIAEQHIVNA-- 470
               .||:| .|..::       .|..:.|..|::.|...|....:||....:.::....:.|.  
  Rat   330 ---SNFQGRYDANLQ-------CASPEYAQGEDVLDAVYAFHLCEDGAEPTSGHLLSAAVTNRSD 384

  Fly   471 LHTTEPSAYELATSSSNRNSGILRMDRQQI-GCDIWRDKVRTRRKLLTMSEGEITCPAHIVTVVC 534
            |...|.||..|.......:...|......| |.:...:.|:..:               :||...
  Rat   385 LAPPESSATTLVDGGEGLHDSTLEPITVAIPGGEHAENAVQIHK---------------VVTGTM 434

  Fly   535 AVITCLLVAMIGISV--------LYYLR--FVKRRRK-----LLHERGPMRTSKSIINVHDRILQ 584
            |:|...|:.::.:.|        |..||  ||.:|||     .:|:...|...:..::       
  Rat   435 ALIFSFLIVVLVLYVSWKCFPASLRQLRQCFVTQRRKQKQKQTMHQMAAMSAQEYYVD------- 492

  Fly   585 GHNPGGLGLGMSMTLGGGNHVNGLGMTLN 613
             :.|              ||:.|..:.:|
  Rat   493 -YKP--------------NHIEGALVIIN 506

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FiliNP_001369108.1 LRR 71..>348 CDD:443914 67/276 (24%)
leucine-rich repeat 75..97 CDD:275378 4/21 (19%)
leucine-rich repeat 98..121 CDD:275380 6/22 (27%)
leucine-rich repeat 122..145 CDD:275380 6/22 (27%)
leucine-rich repeat 146..169 CDD:275380 6/22 (27%)
leucine-rich repeat 170..193 CDD:275380 4/22 (18%)
leucine-rich repeat 194..217 CDD:275380 6/22 (27%)
leucine-rich repeat 218..265 CDD:275380 14/46 (30%)
leucine-rich repeat 266..289 CDD:275380 6/22 (27%)
leucine-rich repeat 290..313 CDD:275380 4/22 (18%)
leucine-rich repeat 314..338 CDD:275380 1/23 (4%)
LRR_8 337..397 CDD:404697 16/59 (27%)
leucine-rich repeat 339..360 CDD:275380 7/20 (35%)
Lrrtm1NP_001382551.1 LRR 1 64..87 5/26 (19%)
LRR_8 73..125 CDD:404697 15/55 (27%)
LRR 2 89..111 7/21 (33%)
leucine-rich repeat 91..114 CDD:275380 6/22 (27%)
LRR <106..>314 CDD:443914 67/281 (24%)
LRR 3 112..135 6/22 (27%)
leucine-rich repeat 115..138 CDD:275380 6/22 (27%)
LRR 4 136..159 10/46 (22%)
leucine-rich repeat 139..162 CDD:275380 10/46 (22%)
LRR 5 161..183 6/21 (29%)
leucine-rich repeat 163..186 CDD:275380 6/22 (27%)
LRR 6 184..207 7/22 (32%)
leucine-rich repeat 187..210 CDD:275380 9/22 (41%)
LRR 7 209..231 4/21 (19%)
leucine-rich repeat 211..234 CDD:275380 5/22 (23%)
LRR 8 233..255 8/22 (36%)
leucine-rich repeat 235..257 CDD:275380 6/22 (27%)
LRR 9 256..278 6/46 (13%)
leucine-rich repeat 258..281 CDD:275380 5/47 (11%)
LRR 10 280..302 10/35 (29%)
leucine-rich repeat 282..300 CDD:275380 8/25 (32%)
leucine-rich repeat 306..318 CDD:275378 4/21 (19%)
May be involved in DLG4-binding. /evidence=ECO:0000250 520..523
Blue background indicates that the domain is not in the aligned region.

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