DRSC/TRiP Functional Genomics Resources

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Protein Alignment pins and gpsm1b

DIOPT Version :10

Sequence 1:NP_524999.2 Gene:pins / 53569 FlyBaseID:FBgn0040080 Length:658 Species:Drosophila melanogaster
Sequence 2:NP_001007779.2 Gene:gpsm1b / 493623 ZFINID:ZDB-GENE-110203-5 Length:622 Species:Danio rerio


Alignment Length:638 Identity:303/638 - (47%)
Similarity:407/638 - (63%) Gaps:92/638 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHD 107
            ||||||||||||||||.:.|.|||:||:|.|||||:||||||||||||||||.:|.|||:||:||
Zfish    25 CLELALEGERLCKAGDFKGGTAFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLKEYGKAMEYHRHD 89

  Fly   108 LTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYH 172
            ||||:::.||:||.|:||||||||||:|::||||:||:|||.::::.||::.|.|||||:|||:|
Zfish    90 LTLARTIGDRVGEGKASGNLGNTLKVLGQYDEAAVCCQRHLDISQEQGDKVGEARALYNIGNVFH 154

  Fly   173 AKGKHLGQ-----RNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLG 232
            ||||.  |     :..|....||:|.|.||..||:.||.|::|||||.|||||.||||||:||||
Zfish   155 AKGKQ--QLWGVCQERGDLPPDVRETLQRATAFYEMNLSLVKDLGDRAAQGRAFGNLGNTHYLLG 217

  Fly   233 DFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVE 297
            :|..||:.|:|||.||:||||:||||||.|||||:.||||||..|.|:|::||.|:.:|.::.:|
Zfish   218 NFVEAIKFHRERLAIAKEFGDKAAERRAYSNLGNALIFLGQFSAATEYYRKTLQLSRQLKDQVME 282

  Fly   298 AQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 362
            ||:|||||||:|||.|:..||:||.:||.|||||.||:||.||||||||.:.::|...:||.|:.
Zfish   283 AQACYSLGNTHTLLQEYERAIDYHLKHLLIAQELNDRVGEGRACWSLGNVYVSLGNLRQALHYSR 347

  Fly   363 QHLQLAKELHDPVGESTARVNISDLRKLLGMPDSEPSPTE-----EEARSTASDHS--------- 413
            :||.:::|:.|..||.|||:|:.:|.:.||:.:.|.||||     :.||...|..|         
Zfish   348 RHLDISREISDCNGELTARLNVEELMEALGVKEDELSPTEPHFKLQGARPKLSKKSSMESVELWK 412

  Fly   414 -ASGNQSDGSENSQGRMVRVRRQSMEQLDL-IKITPDGKRMQEEKLRAQATRKAKDDD-FFEMLS 475
             ::....|.::....|..|..:.:::..|: :.:||           .:..|...|:| ||::||
Zfish   413 FSAEKNGDAADVCVSRSSRSLQSAVDTEDITVSVTP-----------TKLPRDPSDEDCFFDLLS 466

  Fly   476 RSQSKRMDDQRCSIKVNPAGAPAVATGATRKPLV--------QQNSLF---------------VD 517
            :.||.|||||||.:...|.|..|.|...|...::        |...||               |:
Zfish   467 KFQSSRMDDQRCQLDETPDGEEAGADQNTLNDMIDASLLTSPQTEELFDLIASTQSRRLDDQRVN 531

  Fly   518 PTNLPGLKSPSSANPSAIGHGPLARSATTTQQPDDDFLDMLMRCQGSRLEEQRSELPRPNVTMDA 582
            .:|||||:...:......|.|       ..|:|.|||.:||::||.||:::||.           
Zfish   532 VSNLPGLRITHNNLGHLCGDG-------DPQEPSDDFFNMLIKCQSSRIDDQRC----------- 578

  Fly   583 EAEAPPRSVPEAAVPGAPRGQTGRGATVPDEDFFSLIMKVQSGRMEDQRASIP 635
               :||...|             |..|||||||||||.:||:.||::||..:|
Zfish   579 ---SPPEGGP-------------RAPTVPDEDFFSLIQRVQAKRMDEQRVRLP 615

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pinsNP_524999.2 TPR 50..261 CDD:440225 141/215 (66%)
TPR repeat 83..109 CDD:276809 20/25 (80%)
TPR repeat 120..150 CDD:276809 22/29 (76%)
TPR 162..>373 CDD:440225 127/215 (59%)
TPR repeat 162..199 CDD:276809 21/41 (51%)
TPR repeat 219..246 CDD:276809 18/26 (69%)
TPR repeat 251..291 CDD:276809 26/39 (67%)
TPR repeat 296..326 CDD:276809 19/29 (66%)
TPR repeat 338..366 CDD:276809 13/27 (48%)
GoLoco 468..488 CDD:460481 13/20 (65%)
GoLoco 552..573 CDD:460481 11/20 (55%)
GoLoco 613..633 CDD:460481 13/19 (68%)
gpsm1bNP_001007779.2 None

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