DRSC/TRiP Functional Genomics Resources

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Protein Alignment pins and gpsm2

DIOPT Version :10

Sequence 1:NP_524999.2 Gene:pins / 53569 FlyBaseID:FBgn0040080 Length:658 Species:Drosophila melanogaster
Sequence 2:NP_956732.2 Gene:gpsm2 / 393410 ZFINID:ZDB-GENE-040426-1169 Length:648 Species:Danio rerio


Alignment Length:691 Identity:318/691 - (46%)
Similarity:424/691 - (61%) Gaps:148/691 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHD 107
            ||:||||.|||||.||..|||::|:||||.|||||:.|||:|||||||||:|.||:||:::|.||
Zfish     5 CLDLALEAERLCKVGDYSAGVSYFEAAIQVGTEDLQVLSAVYSQLGNAYFHLHDYSKALEFHHHD 69

  Fly   108 LTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYH 172
            |||.::..|||||||:||||||||||:||||||.:||:|||.:||:|||::.:.|||||.|||||
Zfish    70 LTLTRTTGDRLGEAKASGNLGNTLKVLGRFDEAIVCCQRHLDIARELGDKVGQARALYNFGNVYH 134

  Fly   173 AKGKHL--GQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQ 235
            ||||.:  ....||.|.:::..||.||.|:|:.||.::::||||.||||..|||||||||||:|:
Zfish   135 AKGKSVCWSGAEPGDFPEEIMTALRRAAEYYEANLCIVKELGDRAAQGRTYGNLGNTYYLLGNFR 199

  Fly   236 AAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQS 300
            .|:..|::||.||:|||||:|||||..||||:.||||:||.|||||:|.|.:|.:|.:..||||:
Zfish   200 DAVASHEQRLLIAKEFGDRSAERRAYCNLGNACIFLGEFERAAEHYRRALQIARQLKDLAVEAQA 264

  Fly   301 CYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 365
            ||||||||||:.:|..||:||.:||.|||:|.|||||.||||||||||:|:|.|::|:.:||:||
Zfish   265 CYSLGNTYTLMQDFERAIDYHLKHLIIAQDLNDRIGEGRACWSLGNAHTALGNHDQAMHFAEKHL 329

  Fly   366 QLAKELHDPVGESTARVNISDLRKLLGMPDSEPSPTEEEARSTASDHSASGNQSDGSENSQ---- 426
            :::||..|..||.|||:|:|||:.:||:                   |.|.|.|..|||.:    
Zfish   330 EISKETGDRSGELTARMNVSDLQMVLGI-------------------SYSTNNSVLSENKEIDYN 375

  Fly   427 --GRMVRV-RRQSMEQLDLIKITPD-----GK----------------------------RMQEE 455
              |...|: ||.|||.|:|:|:|||     |:                            |.::.
Zfish   376 LHGARPRMSRRHSMENLELLKLTPDKINANGQKWTSDILFKQSKSSLAKSSSKLSFVNRFRGKKH 440

  Fly   456 KLRAQA------------TRKAK--------DDDFFEMLSRSQSKRMDDQRCSIK-------VNP 493
            ||::.:            |.::|        |:.||::|||.||.|||||||:|:       ||.
Zfish   441 KLQSSSSKILQDTSNTRDTPQSKHGSTDMLGDEGFFDLLSRFQSNRMDDQRCAIQDSKSHLSVNS 505

  Fly   494 AGAPAVATGATRKPLVQQNSLFVDP-------------------------TNLPGLKS----PSS 529
            ..:|......|.:....:::  ..|                         .:||||::    .|:
Zfish   506 IASPPTTPPRTIRKSFSESA--ASPGQEPFLRLLANAQGRRLDEQRAGTGNSLPGLRTLNEHSST 568

  Fly   530 ANPSAIGHGPLARSATTTQQPDDDFLDMLMRCQGSRLEEQRSELPRPNVTMDAEAEAPPRSVPEA 594
            .|...|....:|  :|...:|||.|.|||::|||||||:||...|.|:.                
Zfish   569 NNRQMILSQVMA--STDATEPDDQFFDMLVKCQGSRLEDQRCAPPPPST---------------- 615

  Fly   595 AVPGAPRGQTGRGATVPDEDFFSLIMKVQSGRMEDQRASIP 635
                       ||.||||||||||||:.|:.||::||.::|
Zfish   616 -----------RGPTVPDEDFFSLIMRSQAKRMDEQRVTLP 645

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pinsNP_524999.2 TPR 50..261 CDD:440225 136/212 (64%)
TPR repeat 83..109 CDD:276809 17/25 (68%)
TPR repeat 120..150 CDD:276809 24/29 (83%)
TPR 162..>373 CDD:440225 130/212 (61%)
TPR repeat 162..199 CDD:276809 21/38 (55%)
TPR repeat 219..246 CDD:276809 16/26 (62%)
TPR repeat 251..291 CDD:276809 27/39 (69%)
TPR repeat 296..326 CDD:276809 20/29 (69%)
TPR repeat 338..366 CDD:276809 17/27 (63%)
GoLoco 468..488 CDD:460481 13/19 (68%)
GoLoco 552..573 CDD:460481 14/20 (70%)
GoLoco 613..633 CDD:460481 13/19 (68%)
gpsm2NP_956732.2 None

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