DRSC/TRiP Functional Genomics Resources

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Protein Alignment pins and Gpsm2

DIOPT Version :10

Sequence 1:NP_524999.2 Gene:pins / 53569 FlyBaseID:FBgn0040080 Length:658 Species:Drosophila melanogaster
Sequence 2:NP_001178891.1 Gene:Gpsm2 / 362021 RGDID:1560967 Length:678 Species:Rattus norvegicus


Alignment Length:680 Identity:326/680 - (47%)
Similarity:434/680 - (63%) Gaps:125/680 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHD 107
            |||||||||||||:|||||||:||:||:|.|||||:||||||||||||||||.||.||::||.||
  Rat    24 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD 88

  Fly   108 LTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYH 172
            ||||:::.|:|||||:||||||||||:|.||||.:||:|||.::|:|.|::.|.|||||||||||
  Rat    89 LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH 153

  Fly   173 AKGKHLGQRNP---GKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDF 234
            ||||..|...|   |:|.::|:.||..|||.|:|||.|:..||||.|||||.||||||:||||:|
  Rat   154 AKGKSFGCPGPQDVGEFPEEVRLALQAAVELYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNF 218

  Fly   235 QAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 299
            :.|:..|::||.||:||||:||||||.|||||::||||:||.|:|:|::||.||.:|.:|.||||
  Rat   219 RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYRKTLLLARQLKDRAVEAQ 283

  Fly   300 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 364
            ||||||||||||.::..|||||.:||||||||.|||||.|||||||||::|:|.|::|:.:||:|
  Rat   284 SCYSLGNTYTLLQDYEKAIEYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 348

  Fly   365 LQLAKELHDPVGESTARVNISDLRKLLGMPDSEPSPTEEEARSTASDHSASGNQSDGSENSQGRM 429
            |::::|:.|..||.|||:|:|||:.:||:           :.||.:...:...:.|||.:..|..
  Rat   349 LEISREVGDKSGELTARLNLSDLQMVLGL-----------SYSTNNSMMSENIEIDGSLHGAGTK 402

  Fly   430 VRVRRQSMEQLDLIKITPD-------------------------------GKRMQEEKLRAQATR 463
            :. ||.|||.::|:|:||:                               ||:.:......:|..
  Rat   403 LG-RRHSMENMELMKLTPEKVPNWNSEILAKQKPCIAKSSAKLLFVNRLKGKKSKSGSASTKALH 466

  Fly   464 KAK--------------------DDDFFEMLSRSQSKRMDDQRCSIKVNPAGAPAVATGATRKPL 508
            .|.                    |:.||::|.|.||.||:||||.::.|.. |...|:.||.|.:
  Rat   467 HASNPIDHRAPHAQKKVGSDAVGDEGFFDLLRRLQSSRMEDQRCHLQENRT-ASVAASSATPKMV 530

  Fly   509 VQQNSLFVDP------------------------TNLPGLKSPSSANPSAIGHGPLARSATT-TQ 548
            ...::..|.|                        :|||||:.....|.|.     |.|..|. .:
  Rat   531 KAPSASVVSPNTDEFLDLLASSQSRRLDDQRASFSNLPGLRLTEGNNQSV-----LERLMTNDKK 590

  Fly   549 QPDDDFLDMLMRCQGSRLEEQRSELPRPNVTMDAEAEAPPRSVPEAAVPGAPRGQTGRGATVPDE 613
            :||:||.|:|::||||||::||.              |||        |.|.     :|.|||||
  Rat   591 EPDEDFFDILVKCQGSRLDDQRC--------------APP--------PAAT-----KGPTVPDE 628

  Fly   614 DFFSLIMKVQSGRMEDQRASIPFRNANNNN 643
            ||||||::.|:.||::||..:. |:.|.::
  Rat   629 DFFSLILRSQAKRMDEQRVLLQ-RDPNRDS 657

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pinsNP_524999.2 TPR 50..261 CDD:440225 146/213 (69%)
TPR repeat 83..109 CDD:276809 20/25 (80%)
TPR repeat 120..150 CDD:276809 23/29 (79%)
TPR 162..>373 CDD:440225 138/213 (65%)
TPR repeat 162..199 CDD:276809 23/39 (59%)
TPR repeat 219..246 CDD:276809 16/26 (62%)
TPR repeat 251..291 CDD:276809 27/39 (69%)
TPR repeat 296..326 CDD:276809 22/29 (76%)
TPR repeat 338..366 CDD:276809 16/27 (59%)
GoLoco 468..488 CDD:460481 11/19 (58%)
GoLoco 552..573 CDD:460481 12/20 (60%)
GoLoco 613..633 CDD:460481 12/19 (63%)
Gpsm2NP_001178891.1 TPR repeat 27..52 CDD:276809 21/24 (88%)
TPR repeat 64..90 CDD:276809 20/25 (80%)
TPR 65..335 CDD:440225 182/269 (68%)
TPR repeat 101..131 CDD:276809 23/29 (79%)
TPR repeat 203..230 CDD:276809 16/26 (62%)
TPR repeat 243..270 CDD:276809 17/26 (65%)
TPR repeat 281..311 CDD:276809 22/29 (76%)
TPR repeat 322..350 CDD:276809 16/27 (59%)
TPR_7 324..359 CDD:433012 18/34 (53%)
GoLoco 490..512 CDD:214645 13/21 (62%)
GoLoco 543..564 CDD:460481 0/20 (0%)
GoLoco 593..615 CDD:214645 13/35 (37%)
GoLoco 628..649 CDD:460481 12/20 (60%)

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