Protein Alignment pins and gpsm1a

DIOPT Version :10

• Sequence 1: NP_524999.2
• Gene: pins / 53569
• FlyBaseID: FBgn0040080
• Length: 658
• Species: Drosophila melanogaster
• Sequence 2: XP_009300235.1
• Gene: gpsm1a / 100004265
• ZFINID: ZDB-GENE-060526-302
• Length: 183
• Species: Danio rerio
• Alignment Length: 240
• Identity: 64/240 - (26%)
• Similarity: 97/240 - (40%)
• Gaps: 75/240 - (31%)

  Fly   418 QSDGSENSQGRMVRVRRQSMEQLDLIKITPDGKRMQEEKLRAQAT--RKAKDDDFFEMLSRSQSK 480
            :|.|.||   |..:..:|...|.......|.....|...|...::  ...:.::||::::.|||:
Zfish    15 RSSGMEN---RRCQHPQQPNAQAQEASSGPQSSMPQSPLLSGSSSLISLTQTEEFFDLIASSQSR 76

  Fly   481 RMDDQRCSIKVNPAGAPAVATGATRKPLVQQNSLFVDPTNLPGLKSPSSANPSAIGHGPLARSAT 545
            |:||||.||            |......:.||:                     :||   ...|.
Zfish    77 RLDDQRASI------------GDRLGIRIAQNN---------------------VGH---LCEAC 105

  Fly   546 TTQQPDDDFLDMLMRCQGSRLEEQRSELPRPNVTMDAEAEAPPRSVPEAAVPGAPRGQTGRGATV 610
            :.|:|.|:|.:||::.|.||:.:||..||          .||.
Zfish   106 SPQEPSDEFFNMLIKYQSSRINDQRCSLP----------PAPD---------------------- 138

  Fly   611 PDEDFFSLIMKVQSGRMEDQRASI--PFRNANNNNNSRSNNNGSA 653
            |||||||||.||||.||::||.|.  ..::..:.|:....:.||:
Zfish   139 PDEDFFSLIQKVQSKRMDEQRVSFGSDEKDETDLNHKSKTSEGSS 183

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pins	NP_524999.2	TPR	50..261	CDD:440225
		TPR repeat	83..109	CDD:276809
		TPR repeat	120..150	CDD:276809
		TPR	162..>373	CDD:440225
		TPR repeat	162..199	CDD:276809
		TPR repeat	219..246	CDD:276809
		TPR repeat	251..291	CDD:276809
		TPR repeat	296..326	CDD:276809
		TPR repeat	338..366	CDD:276809
		GoLoco	468..488	CDD:460481	10/19 (53%)
		GoLoco	552..573	CDD:460481	9/20 (45%)
		GoLoco	613..633	CDD:460481	15/19 (79%)
gpsm1a	XP_009300235.1	GoLoco	64..84	CDD:460481	10/19 (53%)
		GoLoco	112..133	CDD:460481	9/20 (45%)
		GoLoco	141..162	CDD:460481	15/20 (75%)