DRSC/TRiP Functional Genomics Resources

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Protein Alignment larp and SLF1

DIOPT Version :10

Sequence 1:NP_733244.5 Gene:larp / 53567 FlyBaseID:FBgn0261618 Length:1673 Species:Drosophila melanogaster
Sequence 2:NP_010803.3 Gene:SLF1 / 852127 SGDID:S000002923 Length:447 Species:Saccharomyces cerevisiae


Alignment Length:555 Identity:113/555 - (20%)
Similarity:185/555 - (33%) Gaps:213/555 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   309 NNNAQNTASNKKTQQQQQPQQGATTTTQTTTAAAAAATAAAAATAATTSAAAATSSAAAVPAATT 373
            |:|.:||:|..:.:::|                                    |||....|..||
Yeast     7 NDNPKNTSSAAEDKKKQ------------------------------------TSSLKLAPIPTT 35

  Fly   374 ETATTTTVDASQADALAKVVVKDKKKVNQKASDFSNVGDWPTLIGGTSGSGKATSNEPKRNPTKK 438
            ....:::.|::..     :.|::.:.:::.|....|          .|||.|.||| .|..|.  
Yeast    36 SPWKSSSPDSNTV-----IPVEELRDISKTAKPSKN----------GSGSIKLTSN-TKWTPI-- 82

  Fly   439 QQSAKTAAAVAASSNTTSSEVATESNVAGTTSSSNS----NPSSSTTTTNTTTNSQATTAPVAST 499
                 |.:.:.:.|..|:|:....|..:.|......    |...:....|..|||   |:.:::.
Yeast    83 -----TPSVIISGSKDTNSKSGKNSKNSKTNKKMKKRGKYNNDINKKDFNGQTNS---TSEISNV 139

  Fly   500 SHDAKAQRDAEPAANSAAGTTGTAAGPALTKKIPKHKWRPLPIDLAKSSRPKPIGGRPNRRFSDD 564
            |:......||....|..:.:..||.|.  .|:|              ::......||.:|.    
Yeast   140 SNLESKPLDANAKVNIHSSSGATANGN--IKRI--------------TNNNNSTNGRQSRN---- 184

  Fly   565 IADQRRPPRVYHDRQPGAGGAGVESRHPHAGRHPYGSRPATATSERVDSWRSSSSTTTAAFDEQR 629
                      |.:|..       ::|:.:..||                  |.::....:|    
Yeast   185 ----------YQNRNG-------KTRYNNNSRH------------------SQAANNAISF---- 210

  Fly   630 SGAAGGAGAAGTGVGSATRGPRRYRTPYRGGRQGRGGFSRQGPGRPTYRIPR--HLLASGEYANY 692
                                |..|:                  .||.| ||.  |.|.:....:|
Yeast   211 --------------------PNNYQ------------------ARPEY-IPNASHWLNNNSRNSY 236

  Fly   693 LPADAAGADSQSSYVLMGTHYFGNV--------PAAY-IELDANSIKEAIKKQVEYYFSVDNLTG 748
                     .|.|| .....|:.|:        |..| :|....|| |:||.|:|:|||.:||..
Yeast   237 ---------KQLSY-FRQQQYYNNINYQQQLQTPYYYSMEPIFKSI-ESIKNQIEFYFSEENLKT 290

  Fly   749 DFFLRRKMDP--EGYIPVTLIASFHRV--LALTTDVAVIVNAIKESDKLELFEGYKVRTKTTPTT 809
            |.|||.|...  :|:||::||..|:|:  |:|..|..:|:.:::|                    
Yeast   291 DEFLRSKFKKANDGFIPMSLIGKFYRMVNLSLGGDPNLILASMRE-------------------- 335

  Fly   810 WPITEVPEVNEGEPKAIGTLEQEQLEQNDGQEKLE 844
              :.:..|.|..| .|:|::|..|....|....||
Yeast   336 --VLQHKETNHLE-IALGSIEGAQKNMADDFNPLE 367

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
larpNP_733244.5 LARP_1_2 730..803 CDD:153403 27/76 (36%)
DM15 1341..1382 CDD:128927
DM15 1383..1421 CDD:128927
SLF1NP_010803.3 LHP1 3..443 CDD:227520 113/555 (20%)
Blue background indicates that the domain is not in the aligned region.

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