Protein Alignment larp and LARP1c

DIOPT Version :9

• Sequence 1: NP_001247347.1
• Gene: larp / 53567
• FlyBaseID: FBgn0261618
• Length: 1673
• Species: Drosophila melanogaster
• Sequence 2: NP_567991.1
• Gene: LARP1c / 829743
• AraportID: AT4G35890
• Length: 523
• Species: Arabidopsis thaliana
• Alignment Length: 650
• Identity: 146/650 - (22%)
• Similarity: 240/650 - (36%)
• Gaps: 185/650 - (28%)

  Fly   305 TASQNNNAQNTASNKK------------TQQQQQP-QQGATTTTQTTTAAAAAATAAAAATAATT 356
            :|:.||.|.::.|.::            .|..::| :|.::..||.....:....||||....::
plant     3 SATSNNPASSSMSPRRISGNHGSPTASVAQSPRRPSRQVSSPWTQIVRGESEPIAAAAAVAGPSS 67

  Fly   357 SAAAATSSAAAVPAATTETATTTTVDASQADALAKVV----VKDKKKVNQKASD-FSNVG----- 411
            ..:.|.....|..:....||...||:|:..|..::..    ...||.|.::.|: .|.||
plant    68 PQSRAPIEPIASVSVAAPTAAVLTVEAAAGDEKSEASGGQDNAGKKPVWKRPSNGASEVGPVMGA 132

  Fly   412 -DWPTLIGGTSGSGKATSNEPKRNPTKKQQSAKTAAAVAASSNTTSSEVATE----SNVAGTTSS 471
             .||.|    |.:.||.||:      ....|.|:...|.:||:.:||...|:    ::|.....:
plant   133 SSWPAL----SETTKAPSNK------SSSDSLKSLGDVPSSSSASSSVPVTQGIANASVPAPKQA 187

  Fly   472 SNSNPSSSTTTTNTTTNSQATTAPVASTSHDAKAQRDAEPAANSAAGTTGTAAGPALTKKIPKHK 536
            ..:||       |.|.|.        |.....| ||:.  |:.||.||....:......::|.|
plant   188 GRANP-------NPTPNH--------SRQRSFK-QRNG--ASGSANGTVSQPSAQGSFTELPSH- 233

  Fly   537 WRPLPIDLAKSSRPKPIGGRPNRRF-SDDIADQRRPPRVYHDRQPGAGGAGVESRHPHAGR--HP 598
                        .|.|.|......| |.:......|.:  .|......|...:|   |.||  ..
plant   234 ------------NPSPRGQNQKNGFASQNHGGTENPSQ--RDSYRNQNGNHHQS---HGGRRNQE 281

  Fly   599 YGSRPATATSERVDSWRSSSSTTTAAFDEQRSGAAGGAGAAGTGVGSATRGPRRYRTPYRGGRQG 663
            :|::          :|         .|....:|..|.|.:                      ::|
plant   282 HGNQ----------NW---------TFQRSFNGREGNAQS----------------------QRG 305

  Fly   664 RGGFSRQGPGRPTYRIPRHLLASGEYANYLPADAAGADSQSSY---------VLMGTHYFGNV-- 717
            ...|.|. |......||: .:|:..:.:::|.....|  ||||         :..|..:|.:.
plant   306 TPAFVRH-PSPTVQPIPQ-FMAAQPFPSHIPFPTELA--QSSYYPRMPYMTPIPHGPQFFYHYQD 366

  Fly   718 PAAYIELDANSIKEAIKKQVEYYFSVDNLTGDFFLRRKMDPEGYIPVTLIASFHRVLALTTDVAV 782
            |..:::|         .||::||||.:||..|.:||..|:.||::|:.::|.|.:|..||.::..
plant   367 PPLHMKL---------HKQIQYYFSDENLITDIYLRGFMNNEGFVPLRVVAGFKKVAELTDNIQQ 422

  Fly   783 IVNAIKESDKLELFEGYKVRTKTTPTTWPITEVP------EVNEGE--PKAIGTLEQEQLEQNDG 839
            ||.|::.|..:|: :|..:|.:.....|.:...|      .|:..:  .|.:|.|..:|
plant   423 IVEALQNSPHVEV-QGDFIRKRDNWQNWVLRRNPTGSGPQSVDRADAVAKRLGNLSVDQ------ 480

  Fly   840 QEKLEEQTEADSPPPILTSAMATKPLNSIPPPPMPRNPQNLVPKMLQDKQQSRSSTIAALNSVNA 904
                      .|..||..|:...:|..:                 |.|.||..||| |.:::.||
plant   481 ----------SSADPIGGSSSQLQPTEA-----------------LSDDQQQSSST-APVSNHNA 517

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
larp	NP_001247347.1	LARP_1_2	730..803	CDD:153403	26/72 (36%)
		DM15	1341..1382	CDD:128927
		DM15	1383..1421	CDD:128927
LARP1c	NP_567991.1	LHP1	<182..448	CDD:227520	78/356 (22%)
		LAM	372..442	CDD:153396	27/79 (34%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5193
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0001290
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	3	2.810