DRSC/TRiP Functional Genomics Resources

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Protein Alignment: larp and LARP6c

Sequence 1:NP_001247347.1 Gene:larp FlyBaseID:FBgn0261618 Length:1673 Species:Drosophila melanogaster
Sequence 2:NP_001325674.1 Gene:LARP6c AraportID:AT3G19090 Length:482 Species:Arabidopsis thaliana

Alignment Length:209 Identity:59/210 (28%)
Similarity:86/210 (41%) Gaps:55/210 (26%)


  Fly   631 GAAGG-AGAAGTGVGSATRGPRRYRTPYRGGRQGRGGFSRQGPGRPTYRIPRHLLASGEYANYLP 694
            |..|| .|..|||||:.:..     ..|.||            |.||        |..::.:   
plant    75 GCGGGVCGGGGTGVGTQSSD-----WIYVGG------------GDPT--------AQHQHVH--- 111

  Fly   695 ADAAGADSQSSYVLMGTHYFGNVPAAYIELDANS-----------IKEAIKKQVEYYFSVDNLTG 748
             |.|.|           .|..| ||.......||           ::..|.|||||.|:..:|..
plant   112 -DPAAA-----------FYISN-PAVQFPASQNSSSSSKNLLSDDLRLKIVKQVEYQFTDMSLLA 163

  Fly   749 DFFLRRKM--DPEGYIPVTLIASFHRVLALTTDVAVIVNAIKESDKLELFEGYKVRTKTTPTTWP 811
            :..:.:.:  |||||:||:.|||..::.|||::..::..|::.|.||.:.|..|...:|:..|..
plant   164 NESISKHISKDPEGYVPVSYIASTKKIKALTSNHHLVSLALRSSSKLVVSEDGKKVKRTSQFTDR 228

  Fly   812 ITEVPEVNEGEPKA 825
            ..|..:||....||
plant   229 DREELQVNLNITKA 242

Known Domains:


GeneSequenceDomainRegion External IDIdentity
larpNP_001247347.1 LARP_1_2 730..803 CDD:153403 27/75 (36%)
DM15 1341..1382 CDD:128927
DM15 1383..1421 CDD:128927
LARP6cNP_001325674.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 O PTHR22792
Phylome 00.000 Not matched by this tool.
11.100

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