Protein Alignment: larp and Ssb

• Sequence 1: NP_001247347.1
• Gene: larp
• FlyBaseID: FBgn0261618
• Length: 1673
• Species: Drosophila melanogaster
• Sequence 2: NP_112381.2
• Gene: Ssb
• RGDID: 620804
• Length: 415
• Species: Rattus norvegicus
• Alignment Length: 444
• Identity: 99/445 (22%)
• Similarity: 155/445 (35%)
• Gaps: 121/445 (27%)

  Fly   728 SIKEAIKKQVEYYFSVDNLTGDFFLRR--KMDPEGYIPVTLIASFHRVLALTTDVAVIVNAIKES 790
            :::..|..|:||||...||..|.||:.  |:| ||::|:..:..|:|:..||||..|||.|:.:|
  Rat    12 ALEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLETMIKFNRLNRLTTDFNVIVQALSKS 75

  Fly   791 DKLELFE--GYKVRTKTTPTTWPITEVPEVNEGEPK----------AIGTLE--QEQLEQ----- 836
             |..|.|  ..|.:.:.:|:. |:.||.:..:.:.|          ...||:  :|.|:.
  Rat    76 -KANLMEVSADKTKIRRSPSR-PLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLDDKGQIL 138

  Fly   837 NDGQEKLEEQTEADSPPPILTSAMATKPLNSIPPPPMPRNPQNLVPKMLQD----KQQSRSSTIA 897
            |....:...:|...|...:..|..:.|..  :..|.......||:....:|    |.:.|..
  Rat   139 NIQMRRTLHKTFKGSIFAVFDSIQSAKKF--VDTPGQKYKDTNLLILFKEDYFAKKNEERKQ--- 198

  Fly   898 ALNSVNAISALTQQVEG----GAAE---LAGHLSGLAESVKPKSTSTPDKRNAAS------AGNG 949
              :.|.|.....|:.||    |:.|   |.|.:..|.     |.:...|.:....      :.:|
  Rat   199 --SKVEAKLKAKQEHEGRHKPGSTETRALEGKMGCLL-----KFSGDLDDQTCREDLHFLFSNHG 256

  Fly   950 AGSAAALVAEPEGIWKEVKRRSKTNAI--KENATTPPQQQQPPLSQTLNNNNDNVKTNNTSSKSK 1012
                       |..|.:..|.:|...|  ||.|       :..|.:..:.||.|:...|.....|
  Rat   257 -----------EIKWIDFVRGAKEGIILFKEKA-------KDALEKARSANNGNLLLRNKKVTWK 303

  Fly  1013 SSSNNAPSNASSSATVCVTTNNASSATKATTKTTTTSTATTTTNNNIKSGNAA--YSKTH----- 1070
            ....:|..:|...    :|.:...|..|..:                |.|:||  :..:|
  Rat   304 VLEGHAEKDAMKK----ITDDQQESLNKWKS----------------KGGHAARRFKGSHVFTAA 348

  Fly  1071 --SKSSSKTAAPPSAQCHAEKEELDFQFDEELMDPLPPGTGRINNFTENFSDDD 1122
              .|...|...|..|..                   |.|.|:.......|.|||
  Rat   349 RRFKGRGKGNRPAYAGA-------------------PKGRGQFQGRRTRFDDDD 383

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
larp	NP_001247347.1	LARP_1_2	730..803	CDD:153403	31/77 (40%)
		DM15	1341..1382	CDD:128927
		DM15	1383..1421	CDD:128927
Ssb	NP_112381.2	LARP_3	10..91	CDD:153397	31/81 (38%)
		RRM1_La	112..183	CDD:240737	12/73 (16%)
		RRM_3	230..333	CDD:285930	24/146 (16%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
eggNOG	1	0.900				E1_COG5193
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.900