DRSC/TRiP Functional Genomics Resources

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Protein Alignment: larp and ssb

Sequence 1:NP_001247347.1 Gene:larp FlyBaseID:FBgn0261618 Length:1673 Species:Drosophila melanogaster
Sequence 2:NP_955841.1 Gene:ssb ZFINID:ZDB-GENE-030131-223 Length:401 Species:Danio rerio

Alignment Length:97 Identity:30/98 (31%)
Similarity:58/98 (59%) Gaps:4/98 (4%)


  Fly   725 DANSIKEAIKKQVEYYFSVDNLTGDFFLRRKMD-PEGYIPVTLIASFHRVLALTTDVAVIVNAIK 788
            :.:.:::.:.:|:||||...||..|.||:.::. .:|::|:..:..|:|:.:||::.:|||.::.
Zfish     6 EMSPLEKKVAEQIEYYFGDHNLPRDKFLKEQLQLDDGWVPLETMLKFNRLKSLTSEESVIVESLL 70

  Fly   789 ESDKLELFEGYKVRTKTTPTTWPITEVPEVNE 820
            :| |..|.|..:.:||....  |...:||.||
Zfish    71 KS-KTGLLEISEDKTKIRRD--PNKPLPENNE 99

Known Domains:


GeneSequenceDomainRegion External IDIdentity
larpNP_001247347.1 LARP_1_2 730..803 CDD:153403 23/74 (31%)
DM15 1341..1382 CDD:128927
DM15 1383..1421 CDD:128927
ssbNP_955841.1 LARP_3 7..88 CDD:153397 25/82 (30%)
RRM1_La 109..181 CDD:240737
RRM_3 229..326 CDD:285930
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 1 0.900 E1_COG5193
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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