Protein Alignment: larp and Ssb

• Sequence 1: NP_001247347.1
• Gene: larp
• FlyBaseID: FBgn0261618
• Length: 1673
• Species: Drosophila melanogaster
• Sequence 2: NP_001103615.1
• Gene: Ssb
• MGIID: 98423
• Length: 415
• Species: Mus musculus
• Alignment Length: 435
• Identity: 98/436 (22%)
• Similarity: 152/436 (35%)
• Gaps: 103/436 (24%)

  Fly   728 SIKEAIKKQVEYYFSVDNLTGDFFLRR--KMDPEGYIPVTLIASFHRVLALTTDVAVIVNAIKES 790
            :::..|..|:||||...||..|.||:.  |:| ||::|:..:..|:|:..||||..|||.|:.:|
Mouse    12 ALEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLETMIKFNRLNRLTTDFNVIVQALSKS 75

  Fly   791 DKLELFE--GYKVRTKTTPTTWPITEVPEVNEGEPK----------AIGTLE--QEQLEQ----- 836
             |.:|.|  ..|.:.:.:|:. |:.||.:..:.:.|          ...||:  :|.|:.
Mouse    76 -KAKLMEVSADKTKIRRSPSR-PLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLDDKGQIL 138

  Fly   837 NDGQEKLEEQTEADSPPPILTSAMATKPLNSIPPPPMPRNPQNLVPKMLQD----KQQSRSSTIA 897
            |....:...:|...|...:..|..:.|....|  |.......||:....:|    |.:.|..
Mouse   139 NIQMRRTLHKTFKGSIFAVFDSIQSAKKFVEI--PGQKYKDTNLLILFKEDYFAKKNEERKQ--- 198

  Fly   898 ALNSVNAISALTQQVEG----GAAE---LAGHLSGLAESVKPKSTSTPDKRNAAS------AGNG 949
              :.|.|.....|:.||    |:.|   |.|.:..|.     |.:...|.:....      :.:|
Mouse   199 --SKVEAKLKAKQEHEGRHKPGSTETRALEGKMGCLL-----KFSGDLDDQTCREDLHFLFSNHG 256

  Fly   950 AGSAAALVAEPEGIWKEVKRRSKTNAI--KENATTPPQQQQPPLSQTLNNNNDNVKTNNTSSKSK 1012
                       |..|.:..|.:|...|  ||.|       :..|.:..|.||.|:...|.....|
Mouse   257 -----------EIKWVDFARGAKEGIILFKEKA-------KEALEKARNANNGNLLLRNKKVTWK 303

  Fly  1013 SSSNNAPSNASSSATVCVTTNNASSATKATTKTTTTSTATTTTNNNIKSGNAAYSKTHSKSSSKT 1077
            ....:|...|...    :|.:...|..|..:|       ........|..:...:....|...|.
Mouse   304 VLEGHAEKEALKK----ITDDQQESLNKWKSK-------GGHAGGRFKGSHVFTAARRFKGKGKG 357

  Fly  1078 AAPPSAQCHAEKEELDFQFDEELMDPLPPGTGRINNFTENFSDDD 1122
            ..|..|..                   |.|.|:.:.....|.|||
Mouse   358 NRPGYAGA-------------------PKGRGQFHGRRTRFDDDD 383

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
larp	NP_001247347.1	LARP_1_2	730..803	CDD:153403	31/77 (40%)
		DM15	1341..1382	CDD:128927
		DM15	1383..1421	CDD:128927
Ssb	NP_001103615.1	LARP_3	10..91	CDD:153397	31/81 (38%)
		RRM1_La	112..183	CDD:240737	13/73 (18%)
		RRM_3	230..333	CDD:285930	25/137 (18%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
eggNOG	1	0.900				E1_COG5193
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.900