Protein Alignment: larp and Larp4

• Sequence 1: NP_001247347.1
• Gene: larp
• FlyBaseID: FBgn0261618
• Length: 1673
• Species: Drosophila melanogaster
• Sequence 2: NP_001271452.1
• Gene: Larp4
• MGIID: 2443114
• Length: 720
• Species: Mus musculus
• Alignment Length: 532
• Identity: 110/533 (21%)
• Similarity: 188/533 (35%)
• Gaps: 161/533 (30%)

  Fly   683 LLASGEYANYLPADAAGADSQSSYVLMGTHYFGNVPAAYIELDANSIKEAIKKQVEYYFSVDNLT 747
            ::...|..:|...|.:|..|.:                   :....:||.:|||:|:.||.:||:
Mouse    89 MILGPEDLSYQLYDVSGESSSA-------------------ISTEDLKECLKKQLEFCFSRENLS 134

  Fly   748 GDFFLRRKMDPEGYIPVTLIASFHRVLALTTDVAVIVNAIKESDKLELFE-GYKVR--------- 802
            .|.:|..:||.:.::|:..:|:...:..|||:..:|:..::.|..:::.| |.|||
Mouse   135 KDLYLISQMDSDQFVPIWTVANMEEIKKLTTNTDLILEVLRSSPMVQVDEKGEKVRPSHKRCIVI 199

  Fly   803 TKTTPTTWPITEVPEV--NEGEPKAIG-----------TLEQEQLEQNDGQEK---LEEQTEADS 851
            .:..|.|.|:.||..:  ||..||.|.           |.:.:    .|.|:.   |.|:.:...
Mouse   200 LREIPETTPVEEVKALFKNENCPKVISCEFAHNSNWYITFQSD----TDAQQAFKYLREEVKTFQ 260

  Fly   852 PPPILT------------------SAMATKPLNSIPPPPMP------RNPQ-----NLVPKMLQD 887
            ..||:.                  |:|.|:|:.:....|.|      .|||     :|||
Mouse   261 GKPIMARIKAINTFFAKNGYRLMDSSMYTQPIQTPTQYPSPVFMQPVYNPQQYSVYSLVP----- 320

  Fly   888 KQQSRSSTIAAL-----------NSVNAISALTQQVEGGAAELAGHLSGLAESVKPKSTSTPDKR 941
              ||.|.:.|..           :.||..|:........||...|.       ..||:...|..|
Mouse   321 --QSWSPSPAPYFETPLAPFPNGSFVNGFSSPGSYKTNAAAMNMGR-------PFPKNRVKPHFR 376

  Fly   942 NAASAGNGAGSAAALVAEPEGIWKEVKRRSKTNAIKE--NATTPPQQQQ------PPLSQTLNN- 997
            :::.:.:....:.:|...|      :.|.|....:.|  |.|...||:|      .|:.|...|
Mouse   377 SSSGSEHSTEGSVSLGDGP------LSRSSSRIFLSERHNPTVTGQQEQTYLPKEAPILQMEQNG 435

  Fly   998 ----------------NNDNV-KTNNTSSKSKSS-------SNNAPSNASSSATV---CVTTNNA 1035
                            ::|.: :....::::|:.       :.|.|....||:.|   ....|..
Mouse   436 DFGRGRRTLFRGRRRRDDDRIPRPQPAATEAKAPTPKFDLLATNFPPLPGSSSRVPDELGLENRM 500

  Fly  1036 SSATKATTKTTTTSTATTTTNNNIKSGNAAYSKTHSKSSSKTAAP----PSAQCHAEKEELDF-- 1094
            |...|...:...:.....:.....:.|          .:..|:||    ||..|.||...|..
Mouse   501 SDVVKGVCREKDSEDVRVSCPVPAEDG----------QTDCTSAPLSISPSPPCTAEPPVLSTTQ 555

  Fly  1095 QFDEELMDPLPP 1106
            |..:::.|...|
Mouse   556 QEQDQMEDSAVP 567

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
larp	NP_001247347.1	LARP_1_2	730..803	CDD:153403	26/83 (31%)
		DM15	1341..1382	CDD:128927
		DM15	1383..1421	CDD:128927
Larp4	NP_001271452.1	Interaction with PABPC1. {ECO:0000250|UniProtKB:Q71RC2}	13..22
		Interaction with the poly-A tract of mRNA. {ECO:0000250|UniProtKB:Q71RC2}	108..300		49/215 (23%)
		LARP_4	117..191	CDD:153404	26/74 (35%)
		RRM_LARP4	196..272	CDD:241151	17/80 (21%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
eggNOG	1	0.900				E1_COG5193
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.900