Protein Alignment: larp and ssb-1

• Sequence 1: NP_001247347.1
• Gene: larp
• FlyBaseID: FBgn0261618
• Length: 1673
• Species: Drosophila melanogaster
• Sequence 2: NP_491411.1
• Gene: ssb-1
• WormBaseID: WBGene00016653
• Length: 396
• Species: Caenorhabditis elegans
• Alignment Length: 264
• Identity: 58/265 (22%)
• Similarity: 107/265 (40%)
• Gaps: 72/265 (27%)

  Fly   719 AAYIELDANSIKEAIKKQVEYYFSVDNLTGDFFLRRKM-DPEGYIPVTLIASFHRVLALTTDVAV 782
            ||.:..||:   :.|.||:||||...||..|.||:.|: :.:|::|:|.:.:|:|:.:::.|...
 Worm     5 AAAVHDDAD---QKIIKQLEYYFGNINLPRDKFLQEKLKEDDGWVPITTMLNFNRLASISKDTEK 66

  Fly   783 IVNAIKES------------------------DKLELFEGYKVRT---KTTPTTWPITEVPE-VN 819
            |.||:|.|                        :.||.::..|.||   |...|...:.::.: .|
 Worm    67 IANAVKNSGSGIISVSEDNQKIRRNEENPVPENSLEYWQKIKHRTVYMKGFSTDTQLDDIIQWAN 131

  Fly   820 E-GEPKAIGTLEQEQLEQNDG--------QEKLEEQTEADSPPPILTSAMATKPLNSIPPPPMPR 875
            : ||.:   .:...:|:..|.        ..|..|:.||.....:                   :
 Worm   132 QFGETE---NVLMRRLKPGDRTFKGSVFITYKTREEAEAAQKAEV-------------------K 174

  Fly   876 NPQNLVPKMLQDK---------QQSRSSTIAALNSVNAISALTQQVEGGAAELAGHLSGLAESVK 931
            ..:..:.||:||:         :::|::..||.::.|...|:..:....|......|....:.:.
 Worm   175 FGETELTKMMQDEYWTLKNKETKEARAANKAAKSAKNTSEAIESEKAQHAVRYEKGLILAVDGLG 239

  Fly   932 PKST 935
            |.||
 Worm   240 PDST 243

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
larp	NP_001247347.1	LARP_1_2	730..803	CDD:153403	28/98 (29%)
		DM15	1341..1382	CDD:128927
		DM15	1383..1421	CDD:128927
ssb-1	NP_491411.1	LARP_3	9..90	CDD:153397	26/84 (31%)
		RRM1_La	111..183	CDD:240737	13/94 (14%)
		RRM_3	230..328	CDD:285930	4/15 (27%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
eggNOG	1	0.900				E1_COG5193
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.900