Protein Alignment: larp and larp4b

• Sequence 1: NP_001247347.1
• Gene: larp
• FlyBaseID: FBgn0261618
• Length: 1673
• Species: Drosophila melanogaster
• Sequence 2: XP_012819819.1
• Gene: larp4b
• XenbaseID: XB-GENE-966333
• Length: 1742
• Species: Xenopus tropicalis
• Alignment Length: 705
• Identity: 142/706 (20%)
• Similarity: 225/706 (32%)
• Gaps: 248/706 (35%)

  Fly   729 IKEAIKKQVEYYFSVDNLTGDFFLRRKMDPEGYIPVTLIASFHRVLALTTDVAVIVNAIKESDKL 793
            :::.:||.:|:..|.:||..|.:|..:||.:.|:|:..:|:...|..|:||:.:||:.::....:
 Frog  1160 LRDLLKKTLEFCLSRENLASDMYLISQMDSDQYVPIMTVANLDLVKKLSTDMDLIVDVLRSLPLV 1224

  Fly   794 ELFE-GYKVR---------TKTTPTTWPITEVPEVNEGE--PKAIGTLEQEQLEQNDGQEKLEEQ 846
            ::.| |.|||         .:..|.:.|:.||..:.:||  ||.|..    :...||.. .:..:
 Frog  1225 QVDEKGEKVRPNQNRCIVILREVPESTPVEEVEALFKGENLPKFINC----EFAYNDNW-FITFE 1284

  Fly   847 TEADSPPPILTSAMATKPLNSIPPPPMPRNPQNLVPKMLQDKQQSRSSTIAALNSVNAISALTQQ 911
            :|||:                          |.....:.::.:..:...|.|.....||:..|
 Frog  1285 SEADA--------------------------QQAYKYLREEVKTFQGKPIKARIKAKAIAINT-- 1321

  Fly   912 VEGGAAELAGHLSGLAESVKPKSTSTPDKRNAASAGNGAGSAAALVAEPEGIWKEVKRRSKTNAI 976
                              ..||:...|...|             |.|:
 Frog  1322 ------------------FLPKNGYRPLDMN-------------LYAQ----------------- 1338

  Fly   977 KENATT----PP---QQQQPPLSQTLNNNNDNVKTNNTSSKSKSSSNNAPSNASSSATVCVTTNN 1034
             :..||    ||   .|||.||...:        |..|.|.:.|..:      .|..|....|..
 Frog  1339 -QRYTTSFYIPPVYSPQQQFPLYSLI--------TPQTWSTAHSYLD------PSLVTPFPNTGF 1388

  Fly  1035 ASSATKATTKTTTTSTAT----TTTNNNIKSGNAAYSKTHSKSSSKTAAPPSAQCHAEKEELDFQ 1095
            .:..|..|.|...:..||    |..|.|       ..|:|.:.:.
 Frog  1389 INGFTSPTFKPAASPLATLRPYTPRNRN-------PGKSHLRHTI-------------------- 1426

  Fly  1096 FDEELMDPLPPGTGR---------INNFTENFSDDDESDYEFADRDINKLLIVAQVGRAP-KHEG 1150
                      |.|.|         |.|||             .||.||      .|..|| :..|
 Frog  1427 ----------PSTDRGPALLDGPTIFNFT-------------TDRLIN------GVRAAPTRQPG 1462

  Fly  1151 YDRTADFTSRTKITQDLENIINDGLVNYEEDLWTTTNVVADYKTVNVISQADFEKLAGGRNKSVL 1215
            .:||....:.|.:.::    |..|.|. ..::.|:..:....|......:...:|.:.|..:|
 Frog  1463 QNRTRMQNASTFVKRE----IGTGRVE-PTNIDTSPGLGRGRKNSYGYRKKREDKFSRGPTQS-- 1520

  Fly  1216 PPQVVPPPPPFE------------------EDLDE----TLVGDTTLNSTLN-----NTLKSRRA 1253
            ||.:.||.|.||                  ||..|    |||..|:....||     ||:.|...
 Frog  1521 PPPMKPPSPSFELGLSSFPPLPGAAGNLKPEDFFENRMSTLVISTSKEKNLNVDASTNTVPSGIP 1585

  Fly  1254 R------------FYAAPNSHSIDPRTPRKRKLRHTANPPVEAHVGWLLDTVEHRPRTTSMGSSA 1306
            |            .:.:|.|.|..|...:...::...:|.:| .:...|.|.....:.    :.|
 Frog  1586 REPLLPIPAALPVTFQSPPSPSHSPDESKMIDVQQRESPTIE-RISATLTTASKSVQV----NGA 1645

  Fly  1307 GTSPTASSYGSFGSSVPQSLPVFQHPSHALLKENNFTQQAYHKYHSRCLKERRRL 1361
            .|.....||........:..|..|.....  |:|:          :.|.||.::|
 Frog  1646 ATELRKPSYAEICQRTSKDAPTLQPTKDQ--KQNS----------TACAKEEKKL 1688

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
larp	NP_001247347.1	LARP_1_2	730..803	CDD:153403	24/83 (29%)
		DM15	1341..1382	CDD:128927	4/22 (18%)
		DM15	1383..1421	CDD:128927
larp4b	XP_012819819.1	LARP_4_5_like	1161..1235	CDD:153400	24/74 (32%)
		RRM_LARP5	1240..1316	CDD:241150	17/107 (16%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930				C121326681
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.930