DRSC/TRiP Functional Genomics Resources

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Protein Alignment cic and sox17b

DIOPT Version :10

Sequence 1:NP_001262755.1 Gene:cic / 53560 FlyBaseID:FBgn0262582 Length:2150 Species:Drosophila melanogaster
Sequence 2:NP_988849.1 Gene:sox17b / 394440 XenbaseID:XB-GENE-484865 Length:376 Species:Xenopus tropicalis


Alignment Length:316 Identity:72/316 - (22%)
Similarity:127/316 - (40%) Gaps:82/316 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly  1209 QQQQQQQQAGAAGTAAGQPANKKIRRPMNAFMIFSKKHRKMVHKKHPNQDNRTVSKILGEWWYAL 1273
            |..:.:::||:|.:..  .|..:|||||||||:::|..||.:.:::|:..|..:||:||:.|.:|
 Frog    37 QDAKTKKEAGSANSRG--KAEARIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKSL 99

  Fly  1274 KPEQKAQYHELASSVKDAHFKLHPEWKWCSKDRRKSST------------STATPGGKASGAAGT 1326
            ....|..:.|.|..::..|.:.:|::|:  :.|||...            |...||.:..|....
 Frog   100 TLASKRPFVEEAERLRVQHIQDYPDYKY--RPRRKKQVKRMKREEEGFLPSADIPGPQVMGCNAM 162

  Fly  1327 GDAKQRLVSVDGSDSLEHDMCPS------TPGG-----------------SGSCGG------QGI 1362
            .....:: ...|.:|.:..:.|:      .|.|                 |.:||.      |.:
 Frog   163 VGQNYKM-QYSGQNSQQSQITPAGYFEDHNPVGYYYRGYNVPEYYMSQNSSVTCGPPAQGEYQAL 226

  Fly  1363 SSDLQGDIIPLTIDNYNSTCDEAPTTISMKGN-------------------GNGKLMKNEL---- 1404
            |.:.....||.   ..|::.......:::|.|                   .||::...|.    
 Frog   227 SYNFNSSYIPY---QQNASAPAMGKQMAVKENIIQESPEHGIMGCQVSPQMYNGQMYVPECAKTH 288

  Fly  1405 PSDEDEQMLVVEEEQQQQTVKKI----DLHCRERVNDSDMDDTPFD-YRKQQPEAN 1455
            |..:.||...:.:.||..|...:    |.|.     :||:|.|.|| |...:|:::
 Frog   289 PVAQTEQHSSLHQSQQMVTQNYLPSQQDGHL-----ESDIDKTEFDQYLMYEPKSD 339

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cicNP_001262755.1 DUF4819 349..432 CDD:465014
HMG-box_CIC-like 1231..1308 CDD:438806 27/76 (36%)
sox17bNP_988849.1 HMG-box_SoxF_SOX17 52..132 CDD:438850 28/83 (34%)
PABP-1234 <80..250 CDD:130689 34/175 (19%)
9aaTAD. /evidence=ECO:0000250|UniProtKB:Q9H6I2 326..334 4/7 (57%)
Required for transcriptional activity and interaction with ctnnb1. /evidence=ECO:0000250|UniProtKB:O42601 327..331 2/3 (67%)
Blue background indicates that the domain is not in the aligned region.

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