DRSC/TRiP Functional Genomics Resources

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Protein Alignment cic and Hbp1

DIOPT Version :10

Sequence 1:NP_001262755.1 Gene:cic / 53560 FlyBaseID:FBgn0262582 Length:2150 Species:Drosophila melanogaster
Sequence 2:XP_063117642.1 Gene:Hbp1 / 27080 RGDID:620444 Length:525 Species:Rattus norvegicus


Alignment Length:586 Identity:113/586 - (19%)
Similarity:191/586 - (32%) Gaps:190/586 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   852 NNNNNSNWEVGSNSNTHVA----------ATAAATS--------TVGAQP--------LPPQTTP 890
            :.::|..|||.:|...|..          ||..:.|        .|.:.|        :.....|
  Rat     6 SEHHNMVWEVKTNQRPHAVQRLLLVMDERATGVSDSLELLQCNENVPSSPGYNSCDEHMELDDLP 70

  Fly   891 VSLVMHAPPPQQQPLQ-QQHHHHQPPPPPPASLPAPSAPPTSGSSSSHNSVGHATSVIRISSSQQ 954
            ....:.:.|.|....| .....||..|.|..|......|.   ::...:.|...|.:..|::|.|
  Rat    71 ELQAVQSDPTQSAIYQLSSDVSHQEYPRPSWSQNTSDIPE---NTHREDEVDWLTELANIATSPQ 132

  Fly   955 QHQQQQQHQQQAHPHVVVSGGQTFH----PVIVDATQLSVPLP---------------------- 993
            ....|.....::.|..:::..::.|    |..|.:.:.....|                      
  Rat   133 SPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSAKSGPAFPHDHWKEETPVRHERANSESESG 197

  Fly   994 -------------------PTTV----------SFHQPN----TPTSTAASVASMSQD--KMLAK 1023
                               |:||          .||:.:    ......|..||..::  :|...
  Rat   198 IFCMSSLSDDDDLGWCNSWPSTVWHCFLKGTRLCFHKESKKEWQDVEDFARAASCDEEEIQMGTH 262

  Fly  1024 NGYNAPWFKLLPHMTPMS--------KASPAPVTPTLTTSASSYNVVMMQQQQQHQQLQQQQQLQ 1080
            .||.:...|||.|...:|        ...|..|...|.|         ::.:..|          
  Rat   263 KGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGLLT---------VECKLDH---------- 308

  Fly  1081 QQQQSPPQMPLNHNNNHLIVSAPLSSPGKPLNCSMNDAKVAAAAAAAAVANQRQKQQQEEPDDQL 1145
                  |....|...:....|..:...|.|. |.::...|.....              .||...
  Rat   309 ------PFYVKNKGWSSFYPSLTVVQHGIPC-CEIHIGDVCLPPG--------------HPDAIN 352

  Fly  1146 DDD--VFET-----TTP-------GISANSKKQTAAMRLPTHNSNIRKLEECHDDG--------- 1187
            .||  ||:|     .||       .:|:.::::.|::             .|...|         
  Rat   353 FDDSGVFDTFKSYDFTPMDSSAVYVLSSMARQRRASL-------------SCGGPGTGQEFAGSE 404

  Fly  1188 ---AAGAPATSAAKRRSQSLSALQQQQQQQQQAGAAGTAAGQPANKKIRRPMNAFMIFSKKHRKM 1249
               :.|:|.:|.....|....|::..        ::||.:....| |.:|||||||:|:||:|..
  Rat   405 FSKSCGSPGSSQLSSSSLYTKAVKSH--------SSGTVSATSPN-KCKRPMNAFMLFAKKYRVE 460

  Fly  1250 VHKKHPNQDNRTVSKILGEWWYALKPEQKAQYHELASSVKDAHFKLHPEWKWCSKDRRKSSTSTA 1314
            ..:.:|.:|||.:|.|||:.|..:|.|::..|...|.::.:...:|:|:   |.|.:|.:|.|.:
  Rat   461 YTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPD---CWKRKRTNSVSVS 522

  Fly  1315 T 1315
            :
  Rat   523 S 523

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cicNP_001262755.1 DUF4819 349..432 CDD:465014
HMG-box_CIC-like 1231..1308 CDD:438806 29/76 (38%)
Hbp1XP_063117642.1 None
Blue background indicates that the domain is not in the aligned region.

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