DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vhl and vhl

DIOPT Version :10

Sequence 1:NP_524986.1 Gene:Vhl / 53433 FlyBaseID:FBgn0041174 Length:178 Species:Drosophila melanogaster
Sequence 2:NP_001074153.1 Gene:vhl / 791202 ZFINID:ZDB-GENE-070112-1042 Length:175 Species:Danio rerio


Alignment Length:139 Identity:40/139 - (28%)
Similarity:74/139 - (53%) Gaps:15/139 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 QNNRDGQQ---LVGADQGKVEVYVLFANTTYRTLDLYWVCERERENMYLTLKPFEEVRVNTFTTH 68
            |::::|||   ||.:...:::|.|||.|.:.|.:...|:........|:.::|:...|:.||..|
Zfish     3 QDSQEGQQPLPLVRSLISRIQVNVLFCNCSPRVVKPVWINFLGEPQPYVNIQPYTGRRITTFVGH 67

  Fly    69 SWLFRDYYTGERMHVRSQRIFQPIRVRVPKSQQSPDQLVDVRSEVLIHFPMRSLRENCLWLVARW 133
            .|:|||..|.:.|.|.::.::      :|.|.:: .|:.:.:    |..|:.:||:.||.:|.| 
Zfish    68 PWMFRDAETDDPMVVNNKEMY------LPASLEN-GQVANAK----ITLPVLTLRDRCLQVVRR- 120

  Fly   134 LIRTSNAPR 142
            |:|..:..|
Zfish   121 LVRREDVGR 129

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VhlNP_524986.1 pVHL 21..162 CDD:176472 34/122 (28%)
vhlNP_001074153.1 VHL 15..96 CDD:460360 23/87 (26%)
VHL_C 108..156 CDD:407332 9/23 (39%)

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