DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment alpha-Catr and Vcl

DIOPT Version :9

Sequence 1:NP_726389.4 Gene:alpha-Catr / 49713 FlyBaseID:FBgn0029105 Length:810 Species:Drosophila melanogaster
Sequence 2:XP_038949159.1 Gene:Vcl / 305679 RGDID:1311217 Length:1135 Species:Rattus norvegicus


Alignment Length:1149 Identity:169/1149 - (14%)
Similarity:315/1149 - (27%) Gaps:502/1149 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 AVERFITIGEIIAEENID--IKGDMYEAAKEARDAGKSIERLCDISPLSGMELRHHIEPLKDYGA 100
            ||...:.:|:...:...|  :|.||..|..:..:|...:.:...:     ::...:..|.:||  
  Rat    50 AVSNLVRVGKETVQTTEDQILKRDMPPAFIKVENACTKLVQAAQM-----LQSDPYSVPARDY-- 107

  Fly   101 IILAARSLLSSVTRILLLVDIIVVKKLLTAKKRASESLEKLESVMNFTEFVRAFSVFGTEMIELA 165
            :|..:|.:||..:.:||..|...|:|::...|...|.|...|.|....:.|......|..|.::|
  Rat   108 LIDGSRGILSGTSDLLLTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMA 172

  Fly   166 YLTGHHRNSFKEERRRAQMFSARQILEKSIAILLTSSKNSLIHSDCVIVKENRDTVFCQIRRAMD 230
            .:....:.....:..|..:.::...:::.:.:|:::.|                           
  Rat   173 KMIDERQQELTHQEHRVMLVNSMNTVKELLPVLISAMK--------------------------- 210

  Fly   231 LIHFVVKDSIFDTAKHMPFEKQASNPNYENESIYTTIKRIVNLIKRYKYQMSYYEGSGEGNNNSD 295
             |....|:|     |:...|:...|.|:....:...|..|:.:::...:                
  Rat   211 -IFVTTKNS-----KNQGIEEALKNRNFTVGKMSAEINEIIRVLQLTSW---------------- 253

  Fly   296 AYFSFLDDDLWKSEKNL-----------------------PSAAGG-----------------GR 320
                  |:|.|.|:|:.                       |:|:.|                 |.
  Rat   254 ------DEDAWASKKDTEAMKRALASIDSKLNQAKGWLRDPNASPGDAGEQAIRQILDEAGKVGE 312

  Fly   321 MVNNTNFRK---------HLSSESLDLR---------------------EELSLAFEKLFEKAHD 355
            :......|:         .::.:..|||                     :.|:...|....|...
  Rat   313 LCAGKERREILGTCKMLGQMTDQVADLRARGQGASPVAMQKAQQVSQGLDVLTAKVENAARKLEA 377

  Fly   356 FTDSPY-------ISHN--------------------HRKNILSYCDNCKLEFDLY--------L 385
            .|:|..       .:.|                    ..:.|...||:.|...|:.        |
  Rat   378 MTNSKQSIAKKIDAAQNWLADPNGGPEGEEQIRGALAEARKIAELCDDPKERDDILRSLGEIAAL 442

  Fly   386 NTIMKDQHEGGGG---------------------------------------AGGV--------- 402
            .:.:.|....|.|                                       .|.:         
  Rat   443 TSKLGDLRRQGKGDSPEARALAKQVATALQNLQTKTNRAVANSRPAKAAVHLEGKIEQAQRWIDN 507

  Fly   403 -----GGVGGGQVKG----------------RSDPELGMLSSLEELCKQL-------------VV 433
                 .|||...::|                |.| .|.....:::|..||             ..
  Rat   508 PTVDDRGVGQAAIRGLVAEGHRLANVMMGPYRQD-LLAKCDRVDQLAAQLADLAARGEGESPQAR 571

  Fly   434 SVSSQIEDFNESLKI----------------CSKLVKSFHVLAT-NYDIDN----LNQRSSKFHD 477
            :::||::|..:.||.                .:..:|...|.|| ..|..|    .::|::.|.:
  Rat   572 ALASQLQDSLKDLKTQMQEAMTQEVSDVFSDTTTPIKLLAVAATAPPDAPNREEVFDERAANFEN 636

  Fly   478 CCDHIFDICKLLQHI-----APTERLQVQAKCLAINLRIYGPQVFIAAKILWKYSNSSAANENFE 537
            ....:....:....:     :..|.:|...|    ..|...|||..||:||.:...:.||.|:||
  Rat   637 HSGRLGATAEKAAAVGAANKSTVEGIQASVK----TARELTPQVISAARILLRNPGNQAAYEHFE 697

  Fly   538 SFSDMW--------------------------------------------KWLTNEISMIAKK-- 556
            :..:.|                                            :.|....:.||::  
  Rat   698 TMKNQWIDNVEKMTGLVDEAIDTKSLLDASEEAIKKDLDKCKVAMANIQPQMLVAGATSIARRAN 762

  Fly   557 --ILVSINTTKGDRDAD-AEKCESSSDKLTK---------------------------SGV---- 587
              :||:....:...|.. .|..:::||:|:|                           ||.    
  Rat   763 RILLVAKREVENSEDPKFREAVKAASDELSKTISPMVMDAKAVAGNISDPGLQKSFLDSGYRILG 827

  Fly   588 ---------------------------------------------------PATEDGEMVEYSGL 601
                                                               |..:|.|..|....
  Rat   828 AVAKVREAFQPQEPDFPPPPPDLEQLRLTDELAPPKPPLPEGEVPPPRPPPPEEKDEEFPEQKAG 892

  Fly   602 EGKNN------GDLNTYQSKWS-----------------------------EDLSDD-------- 623
            |..|.      ..|:....|||                             .|:.||        
  Rat   893 EVINQPMMMAARQLHDEARKWSSKPGLPAAQVGIGVVAEADAADAVGFPFPSDMEDDSEPELLLV 957

  Fly   624 ----------------------------NDILKRAKNMSAMAFLMYQFTKGNGSLRTTQDLFTQA 660
                                        |||:..||.|:.:...|.:..:|...  |.:.|...|
  Rat   958 PANQPVNQPILAAAQSLHREATKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSG--TKRALIQCA 1020

  Fly   661 EYFAEEANRLYKVLRHFSYQVPASDNKKDLLNILDRVPTFVQALQF--TVKDHTVGKA------- 716
            :..|:.::.:.::.:..:.|......:.:||.:.:|:||....|:.  |||...:|:.       
  Rat  1021 KDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISDEES 1085

  Fly   717 --ATFVKVDHVIRETKNLMNVINKVVSKCFECATKYKLNLTGIT 758
              ||    :.::...:|||..:.:.|.:....:.|.:.: .|.|
  Rat  1086 EQAT----EMLVHNAQNLMQSVKETVREAEAASIKIRTD-AGFT 1124

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alpha-CatrNP_726389.4 Vinculin 52..755 CDD:279395 164/1130 (15%)
VclXP_038949159.1 Vinculin 66..1135 CDD:395830 166/1133 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3681
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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