DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment heph and ptbp1b

DIOPT Version :10

Sequence 1:NP_001247399.1 Gene:heph / 48571 FlyBaseID:FBgn0011224 Length:898 Species:Drosophila melanogaster
Sequence 2:NP_001116126.1 Gene:ptbp1b / 321220 ZFINID:ZDB-GENE-030131-9796 Length:564 Species:Danio rerio


Alignment Length:634 Identity:300/634 - (47%)
Similarity:388/634 - (61%) Gaps:110/634 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   299 TSLHLSSPKKVRIDEQYIYKLNYLRGSDELLSQAA----VMAPASDNNNQDLATKKAKLEPGTVL 359
            |.|:........:|..:...:...||||||.|...    :|:.|::.|:    :||.|       
Zfish     7 TELYPMGSSYAELDVVHDIAVGTKRGSDELFSCVTSGPYIMSSAANGND----SKKFK------- 60

  Fly   360 AGGI---AKASKVIHLRNIPNESGEADVIALGIPFGRVTNVLVLKGKNQAFIEMADEISATSMVS 421
             |.|   |..|:|||:|.:||:..||:|||||:|||:|||:|:||||||||:||..|.:|.:||:
Zfish    61 -GDIRSPAVPSRVIHVRKLPNDINEAEVIALGLPFGKVTNLLMLKGKNQAFLEMNSEEAAQTMVT 124

  Fly   422 CYTVTPPQMRGRMVYVQFSNHRELKTDQGHNNSTAHSDYSVQSPASGSPLPLSAAANATSNNANS 486
            .|:...|.:|...:::|:|||:|||||...|...|.:                            
Zfish   125 YYSSVTPVIRNHPIFMQYSNHKELKTDNSPNQVRAQA---------------------------- 161

  Fly   487 SSDSNSAMGILQNTSAVNAG----GNTNAAG--GPNTVLRVIVESLMYPVSLDILHQIFQRYGKV 545
                     .||..:||..|    |..:.:|  ||:.|||||||:|.|||:||:|||||.::|.|
Zfish   162 ---------ALQAVNAVQTGSLTLGGVDPSGMTGPSPVLRVIVENLFYPVTLDVLHQIFSKFGTV 217

  Fly   546 LKIVTFTKNNSFQALIQYPDANSAQHAKSLLDGQNIYNGCCTLRIDNSKLTALNVKYNNDKSRDF 610
            ||::||||||.||||:|:.|..:|||||..|||||||||||||||..||||:||||||||||||:
Zfish   218 LKVITFTKNNQFQALLQFTDGLTAQHAKLALDGQNIYNGCCTLRISFSKLTSLNVKYNNDKSRDY 282

  Fly   611 TNPALPPGEPGVDIMPTAGGLMNTNDLLLIAARQRPSLSVNGL----GAPGVL------------ 659
            |.|.||.|:                        .:|:|..:.:    .|||::            
Zfish   283 TRPDLPTGD------------------------SQPALEHHAVAAAFAAPGIISAAPYASAHAFP 323

  Fly   660 PPFAL---GLGTPLTGGYNNALPNLA--AFSLANSGALQTTAPAMRGYSNVLLVSNLNEEMVTPD 719
            |.||:   ||..|   |...||.:|.  ..:.|.:.|.:...|.:.|...|:||||||.|.|||.
Zfish   324 PAFAIQQAGLTIP---GVPGALASLTIPGAAAAAAAASRLGFPTLTGTHCVMLVSNLNPERVTPH 385

  Fly   720 ALFTLFGVYGDVQRVKILYNKKDSALIQMAEPQQAYLAMSHLDKLRLWGKPIRVMASKHQAVQLP 784
            .||.||||||||.||||::|||::|||||::..||.||||||:..:|:|:|:|:..|||..||:|
Zfish   386 CLFILFGVYGDVLRVKIMFNKKENALIQMSDGTQAQLAMSHLNGQKLYGRPLRITLSKHTTVQMP 450

  Fly   785 KEGQPDAGLTRDYSQNPLHRFKKPGSKNYQNIYPPSATLHLSNIPSSCSEDDIKEAFTSNSFEVK 849
            :||..|.|||:|||.:|||||||||||||.||:|||:||||||||.|..|||:|..|.|:...||
Zfish   451 REGHEDQGLTKDYSNSPLHRFKKPGSKNYSNIFPPSSTLHLSNIPPSVVEDDLKLLFGSSGALVK 515

  Fly   850 AFKFFPKDRKMALLQLLSVEEAVLALIKMHNHQLSESNHLRVSFSKSNI 898
            .||||.|||||||:|:.|||||:.:||:.|||.|.|::|||||||||.|
Zfish   516 NFKFFQKDRKMALIQMSSVEEAIESLIQFHNHDLGENHHLRVSFSKSTI 564

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hephNP_001247399.1 hnRNP-L_PTB 366..898 CDD:273733 280/558 (50%)
ptbp1bNP_001116126.1 hnRNP-L_PTB 69..564 CDD:273733 280/558 (50%)

Return to query results.
Submit another query.