DRSC/TRiP Functional Genomics Resources

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Protein Alignment Polr2F and polr2f

DIOPT Version :10

Sequence 1:NP_524910.1 Gene:Polr2F / 48312 FlyBaseID:FBgn0003275 Length:131 Species:Drosophila melanogaster
Sequence 2:NP_001002544.1 Gene:polr2f / 436817 ZFINID:ZDB-GENE-040718-279 Length:127 Species:Danio rerio


Alignment Length:128 Identity:86/128 - (67%)
Similarity:102/128 - (79%) Gaps:7/128 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 DNDDVGGD-DFDDV-DEDVDEDIN--QEEEADNIEIIAPGGAGGGGVPKSKRITTKYMTKYERAR 67
            ||:|...| ||||| ||:..:|:.  ::|:.:|::|:.   ||.|.....|||||:|||||||||
Zfish     3 DNEDNFDDGDFDDVEDEEPLDDLENVEDEDQENVQILP---AGEGQQANQKRITTQYMTKYERAR 64

  Fly    68 VLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIRRYLPDHSYEDWSIDELIMVD 130
            ||||||||||||||:||||:||||||||||||||.:||||||||||||.|||||..||||:.|
Zfish    65 VLGTRALQIAMCAPVMVELEGETDPLQIAMKELKSRKIPIIIRRYLPDGSYEDWGCDELIITD 127

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Polr2FNP_524910.1 PLN00152 27..130 CDD:177755 73/104 (70%)
polr2fNP_001002544.1 PLN00152 <26..127 CDD:177755 73/103 (71%)

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