Protein Alignment Polr2F and rpb-6

DIOPT Version :10

• Sequence 1: NP_524910.1
• Gene: Polr2F / 48312
• FlyBaseID: FBgn0003275
• Length: 131
• Species: Drosophila melanogaster
• Sequence 2: NP_496278.1
• Gene: rpb-6 / 174630
• WormBaseID: WBGene00007355
• Length: 137
• Species: Caenorhabditis elegans
• Alignment Length: 138
• Identity: 80/138 - (57%)
• Similarity: 101/138 - (73%)
• Gaps: 13/138 - (9%)

  Fly     2 DDADY---DNDD-VGGDDFDDV-DEDVDEDINQEEEADNI----EIIAPGGAGGGGVPKSKRITT 57
            |:.||   |||| |..::.:|| :||.....|::|:.||:    |:...|.|    ||.|:.:||
 Worm     3 DEDDYQDMDNDDFVDDNEMEDVIEEDPQRPDNEDEDDDNVDENFELFDQGKA----VPTSEHVTT 63

  Fly    58 KYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIRRYLPDHSYEDWS 122
            .:|||||||||||||||||||.||:||||:||||||:||.|||||::||||:||||||.|||||.
 Worm    64 PFMTKYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKQRRIPIIVRRYLPDGSYEDWP 128

  Fly   123 IDELIMVD 130
            .|:|.:.|
 Worm   129 TDQLQLAD 136

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Polr2F	NP_524910.1	PLN00152	27..130	CDD:177755	67/106 (63%)
rpb-6	NP_496278.1	RNA_pol_Rpb6	<46..136	CDD:449344	63/93 (68%)