DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment hbn and gsc

DIOPT Version :10

Sequence 1:NP_788420.1 Gene:hbn / 47894 FlyBaseID:FBgn0008636 Length:409 Species:Drosophila melanogaster
Sequence 2:NP_001016704.1 Gene:gsc / 549458 XenbaseID:XB-GENE-486771 Length:243 Species:Xenopus tropicalis


Alignment Length:68 Identity:36/68 - (52%)
Similarity:51/68 - (75%) Gaps:0/68 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   151 RKVRRSRTTFTTFQLHQLERAFEKTQYPDVFTREDLAMRLDLSEARVQVWFQNRRAKWRKREKFM 215
            |:.||.||.||..||..||..|::|:||||.|||.||.|:.|.|.:|:|||:|||||||::::..
 Frog   146 RRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARRVHLREEKVEVWFKNRRAKWRRQKRSS 210

  Fly   216 NQD 218
            :::
 Frog   211 SEE 213

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hbnNP_788420.1 Homeodomain 154..210 CDD:459649 34/55 (62%)
gscNP_001016704.1 Homeodomain 149..205 CDD:459649 34/55 (62%)

Return to query results.
Submit another query.