DRSC/TRiP Functional Genomics Resources

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Protein Alignment hbn and al

DIOPT Version :10

Sequence 1:NP_788420.1 Gene:hbn / 47894 FlyBaseID:FBgn0008636 Length:409 Species:Drosophila melanogaster
Sequence 2:NP_722629.1 Gene:al / 33208 FlyBaseID:FBgn0000061 Length:408 Species:Drosophila melanogaster


Alignment Length:408 Identity:124/408 - (30%)
Similarity:166/408 - (40%) Gaps:112/408 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 LGNQHQIKRSDTPSEVLITHPHHGHPHHIHHLHSSNSNGSNHLSHQQQQQHSQQQHHSQQQQQQQ 107
            :|...:||..:.|.|..:.||.       ..:....:.||:..|.......|             
  Fly     1 MGISEEIKLEELPQEAKLAHPD-------AVVLVDRAPGSSAASAGAALTVS------------- 45

  Fly   108 QLQVQAKREDSPTNTDGGLDVDNDDELSSSLNNGHDLSDMER-----PRKVRRSRTTFTTFQLHQ 167
             :.|........:...||        .:|.:::|:  ||.|.     .||.||.|||||:|||.:
  Fly    46 -MSVSGGAPSGASGASGG--------TNSPVSDGN--SDCEADEYAPKRKQRRYRTTFTSFQLEE 99

  Fly   168 LERAFEKTQYPDVFTREDLAMRLDLSEARVQVWFQNRRAKWRKREKFMNQDKAGYLLPEQGLPEF 232
            ||:||.:|.||||||||:|||::.|:|||:|||||||||||||      |:|.|           
  Fly   100 LEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRK------QEKVG----------- 147

  Fly   233 PLGIPLPPHGLPGHPGSMQS---EFWPPH------FALHQHFNPAAAA-----------AAGLLP 277
            |...|..|: |||...:||:   ...||:      |.|.:.|:...||           ||.::|
  Fly   148 PQSHPYNPY-LPGGAATMQTVVGAALPPNPFTHLGFQLRKPFDAQHAANLAAFRYPHLSAAPMIP 211

  Fly   278 -----QHLMAPHYKLPNFHTLLSQYMGLSNLNGIFGAGAAAAAAAASAGYPQNL-----SLHAGL 332
                 |...||.:.||  |.:...|...|:...:. |...|.......|.|..|     .||:..
  Fly   212 SGYFNQFQRAPPHMLP--HGMAGMYSPSSSFQSLL-ANMTAVPRGTPLGKPPALLVGSPDLHSPN 273

  Fly   333 SAMSQVSPPCSNSSPRESPKL---VPHPTPPHATP--PAGGNGGGGLLTGGLISTAAQSPNSAAG 392
            ..::  |||.|.:|...|...   ..||.||.|.|  |.|            :..|..||....|
  Fly   274 HMLA--SPPTSPASGHASQHQQHPTAHPPPPQAPPQMPVG------------VQPAQLSPQHLVG 324

  Fly   393 ------ASSNASTPVSVV 404
                  |||.:.|..|.|
  Fly   325 IALTQQASSLSPTQTSPV 342

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hbnNP_788420.1 Homeodomain 154..210 CDD:459649 41/55 (75%)
alNP_722629.1 Homeodomain 86..142 CDD:459649 41/55 (75%)
OAR 374..391 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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