DRSC/TRiP Functional Genomics Resources

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Protein Alignment hbn and Arx

DIOPT Version :10

Sequence 1:NP_788420.1 Gene:hbn / 47894 FlyBaseID:FBgn0008636 Length:409 Species:Drosophila melanogaster
Sequence 2:NP_001093644.1 Gene:Arx / 317268 RGDID:1562672 Length:566 Species:Rattus norvegicus


Alignment Length:494 Identity:133/494 - (26%)
Similarity:189/494 - (38%) Gaps:153/494 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 TTTTSQHHQHHPIMPPAMRPAPVQESPVSRPRAVYSIDQIL----GNQHQIKRSDT--------- 54
            |.|.....:..|..|||.||...|:|..:...|..:....|    ..|..|.||.:         
  Rat   118 TGTAGPRGEVPPPPPPAARPGERQDSAGAVAAAAAAAWDTLKISQAPQVSISRSKSYRENGAPFV 182

  Fly    55 -PSEVL--------ITHPHHGHPHHIHHLHSSNSNGS--------------NHLSHQQQQQHSQQ 96
             |...|        :.||.       ..|.:::..||              ..|...::.:..::
  Rat   183 PPPPALDELGGPGGVAHPE-------ERLSAASGPGSAPAAGGGTGTEEDEEELLEDEEDEDEEE 240

  Fly    97 QHHSQQQQQQQQLQVQAKRED----------------------SPTNTDGG------------LD 127
            :.....:::..:...:|..::                      :...|:||            .|
  Rat   241 ELLEDDEEELLEDDARALLKEPRRCSVATTGTVAAAAAAAAAAAAVATEGGELSPKEELLLHPED 305

  Fly   128 VD-NDDELSSSLNNGHDLSDMERPRKVRRSRTTFTTFQLHQLERAFEKTQYPDVFTREDLAMRLD 191
            .: .|.|.|..|:.|.|..:....||.||.|||||::||.:|||||:||.||||||||:||||||
  Rat   306 AEGKDGEDSVCLSAGSDSEEGLLKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLD 370

  Fly   192 LSEARVQVWFQNRRAKWRKREKFMNQDKAGYLLPEQGLPEFPLGIPLPPHGLPGHPGS--MQSEF 254
            |:||||||||||||||||||||             .|....|.|:|.|......||.|  :.:..
  Rat   371 LTEARVQVWFQNRRAKWRKREK-------------AGAQTHPPGLPFPGPLSATHPLSPYLDASP 422

  Fly   255 WPPHF-ALHQHFNPAAAAAAGLLPQHLMAPHYKLPNFHTLLSQYMGLSNLNGIFGAGAAAAAAAA 318
            :|||. ||...:..||||||...|.....|                             .:|:..
  Rat   423 FPPHHPALDSAWTAAAAAAAAAFPSLPPPP-----------------------------GSASLP 458

  Fly   319 SAGYPQNLSLHAGLSAMSQ---VSP----------PCSNSSPRESPKLVPHPTPPHATPPAGGNG 370
            .:|.|..||...|.:....   :||          |.:::|  .:..|:..|||           
  Rat   459 PSGAPLGLSTFLGAAVFRHPAFISPAFGRLFSTMAPLTSAS--TAAALLRQPTP----------- 510

  Fly   371 GGGLLTGGLISTAAQSPNSAAGASSNASTPVSVVTKGED 409
               .:.|.:.|.|...|.:|| |...||:..::..|.::
  Rat   511 ---AVEGAVASGALADPATAA-ADRRASSIAALRLKAKE 545

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hbnNP_788420.1 Homeodomain 154..210 CDD:459649 46/55 (84%)
ArxNP_001093644.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 50..79
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 119..264 24/151 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 286..319 8/32 (25%)
Homeodomain 333..389 CDD:459649 46/55 (84%)
OAR 530..548 CDD:461067 3/16 (19%)
OAR. /evidence=ECO:0000255|PROSITE-ProRule:PRU00138 534..547 2/12 (17%)
Blue background indicates that the domain is not in the aligned region.

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