DRSC/TRiP Functional Genomics Resources

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Protein Alignment hbn and Vsx2

DIOPT Version :10

Sequence 1:NP_788420.1 Gene:hbn / 47894 FlyBaseID:FBgn0008636 Length:409 Species:Drosophila melanogaster
Sequence 2:NP_001284897.1 Gene:Vsx2 / 31469 FlyBaseID:FBgn0263512 Length:645 Species:Drosophila melanogaster


Alignment Length:419 Identity:113/419 - (26%)
Similarity:165/419 - (39%) Gaps:90/419 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 QHHQ--------HHPI-MPPAMRPA--------PVQESPVSRPRAVYSIDQILGNQHQIKRSDTP 55
            ||||        ||.: |..|.|.|        .....|.....||:...|   :|||       
  Fly    91 QHHQPHHHQYREHHQMTMAAASRMAYFNAHAAVAAAFMPHQLAAAVHHHHQ---HQHQ------- 145

  Fly    56 SEVLITHPHHGHPHHIHHLHSSNSNGSNHLSHQQQQQHSQQQHHSQQQQQQQQLQVQAKREDSPT 120
                 .|||| ||||.|     .:.|........|..|....||.....|... |:::....:.|
  Fly   146 -----HHPHH-HPHHPH-----GAVGGPPPPPPMQHHHPHHPHHPLLHAQGFP-QLKSFAAGAGT 198

  Fly   121 NTDGGLDVDNDDELSSSLNNGHDLSDMERPRKVRRSRTTFTTFQLHQLERAFEKTQYPDVFTRED 185
            ...|.| ...|..:.|....|...:..::.:|.|.|||.||::||.:||.||::..||||:.||.
  Fly   199 CLPGSL-APKDFGMESLNGFGVGPNSKKKKKKRRHSRTIFTSYQLEKLEEAFKEAHYPDVYAREM 262

  Fly   186 LAMRLDLSEARVQVWFQNRRAKWRKREKFMNQDKAGYLLPEQGLPEFPLGIPLPPHGLPGHPGSM 250
            |:::.:|.|.|:|||||||||||||.||...   ...::.|.||                 .|:|
  Fly   263 LSLKTELPEDRIQVWFQNRRAKWRKTEKVWG---GSTIMAEYGL-----------------YGAM 307

  Fly   251 QSEFWPPHFALHQHFNPAAAAAAGLLPQHLMAPHYKLPNFHTLLSQYMGLSNLNGIFGAGAAAAA 315
            .....|....:.:......|.|..||.......|.|.....:.|....|:|:...         :
  Fly   308 VRHSLPLPDTILKSAKDNDAVAPWLLGMEQKCMHRKSIEAQSALKDDSGVSDHED---------S 363

  Fly   316 AAASAGYPQNLS------LHAGLSAMSQVSPPCSNSSPRESPKLVPHPTPPHATPPAGGNGGGGL 374
            |.:.:.:.::||      |.:...:::.|||     :|...|.......||.:|   .|..|.. 
  Fly   364 AGSKSAHSEDLSRSRCHALSSSTESLNVVSP-----APSSCPTSASTSAPPTST---SGYAGAA- 419

  Fly   375 LTGGLISTAAQSPNSAAGASSNASTPVSV 403
                  |:||.:|..|:..:|::|..:.:
  Fly   420 ------SSAATTPTGASTTNSSSSPHIEL 442

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hbnNP_788420.1 Homeodomain 154..210 CDD:459649 33/55 (60%)
Vsx2NP_001284897.1 Homeodomain 230..287 CDD:459649 33/56 (59%)
OAR 556..572 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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