DRSC/TRiP Functional Genomics Resources

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Protein Alignment hbn and Pax3

DIOPT Version :10

Sequence 1:NP_788420.1 Gene:hbn / 47894 FlyBaseID:FBgn0008636 Length:409 Species:Drosophila melanogaster
Sequence 2:NP_001152992.1 Gene:Pax3 / 18505 MGIID:97487 Length:484 Species:Mus musculus


Alignment Length:338 Identity:105/338 - (31%)
Similarity:142/338 - (42%) Gaps:109/338 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 LSHQQQQQHSQQQHHSQQQQQQQQLQVQAKREDSPTNTDGGLDVDNDDELSSSLNNGHDLSDMER 149
            |..::.::..::..||..       .:.::|..:| .:|.|.|:|::             .|:..
Mouse   172 LERKEAEESEKKAKHSID-------GILSERASAP-QSDEGSDIDSE-------------PDLPL 215

  Fly   150 PRKVRRSRTTFTTFQLHQLERAFEKTQYPDVFTREDLAMRLDLSEARVQVWFQNRRAKWRKREKF 214
            .||.||||||||..||.:||||||:|.|||::|||:||.|..|:||||||||.||||:||| :..
Mouse   216 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRK-QAG 279

  Fly   215 MNQDKA-GYLLPEQGLPEFPLGIP-LP----------PHGLP---GHPGSMQSEFWP-PHFALHQ 263
            .||..| .:|:| .|.|  |..:| ||          |..:|   ..|.|......| |...:||
Mouse   280 ANQLMAFNHLIP-GGFP--PTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQ 341

  Fly   264 HFNPAAAAAAGLLPQHLMAPHYKLPNFHTLLSQY-------MGLSN-LNGIFGAGAAAAAAAASA 320
            ...|:.|.::..         |.||:.....|.|       .|.|| :|...|.|.:        
Mouse   342 STIPSNADSSSA---------YCLPSTRHGFSSYTDSFVPPSGPSNPMNPTIGNGLS-------- 389

  Fly   321 GYPQNLSL---HAGLSAMSQVSPPCSNSSPRESPKLVPH-PTPPHATPPAGGNGGGGLLTGGLIS 381
              ||.:.|   |.|                      ||| |...:|..|         |||||  
Mouse   390 --PQVMGLLTNHGG----------------------VPHQPQTDYALSP---------LTGGL-- 419

  Fly   382 TAAQSPNSAAGAS 394
                .|.:...||
Mouse   420 ----EPTTTVSAS 428

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hbnNP_788420.1 Homeodomain 154..210 CDD:459649 40/55 (73%)
Pax3NP_001152992.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21
PAX 34..159 CDD:128645
PAI subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 37..93
RED subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 113..161
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 165..228 19/76 (25%)
Homeodomain 220..276 CDD:459649 40/55 (73%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 309..351 10/41 (24%)
Pax7 347..391 CDD:403540 12/62 (19%)
Blue background indicates that the domain is not in the aligned region.

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