DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment hbn and pax-3

DIOPT Version :10

Sequence 1:NP_788420.1 Gene:hbn / 47894 FlyBaseID:FBgn0008636 Length:409 Species:Drosophila melanogaster
Sequence 2:NP_496189.2 Gene:pax-3 / 185022 WormBaseID:WBGene00003939 Length:308 Species:Caenorhabditis elegans


Alignment Length:251 Identity:64/251 - (25%)
Similarity:85/251 - (33%) Gaps:100/251 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   110 QVQAKREDSPTNTDGGLDVD------NDDELSSSLNNGHDLSDMERPRKVRRSRTTFTTFQLHQL 168
            :::.||.....::..|:.:|      :|||..||.:|  |.|.       ||:||:||..||..|
 Worm   147 KMERKRLSYSIDSILGISIDECSKSSSDDEEGSSPSN--DASS-------RRNRTSFTAEQLDVL 202

  Fly   169 ERAFEKTQYPDVFTREDLAMRLDLSEARVQVWFQNRRAKWRKREKFMNQDKAGYLLPEQGL---- 229
            |.||....||....||.::....|||.::..||.||||:.||......|...      ||.    
 Worm   203 ENAFRADTYPHANARESISKETGLSEEKIMTWFSNRRARCRKNMPMYQQYNV------QGFGSSP 261

  Fly   230 PEFPLGIPLPPHGLPGHPGSMQSEFWPPHFALHQHFNPAAAAAAGLLPQHLMAPHYKLPNFHTLL 294
            |.:|..:|.|...||.:..|.|             .||       |..||::             
 Worm   262 PSYPTLLPSPMMFLPSYSTSPQ-------------LNP-------LFFQHIL------------- 293

  Fly   295 SQYMGLSNLNGIFGAGAAAAAAAASAGYPQNLSLHAGLSAMSQVSPPCSNSSPRES 350
                                                      |.|||.|.|||..|
 Worm   294 ------------------------------------------QSSPPSSQSSPPSS 307

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hbnNP_788420.1 Homeodomain 154..210 CDD:459649 25/55 (45%)
pax-3NP_496189.2 PAX 13..141 CDD:238076
Homeodomain 188..244 CDD:459649 25/55 (45%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.