DRSC/TRiP Functional Genomics Resources

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Protein Alignment hbn and Vsx2

DIOPT Version :10

Sequence 1:NP_788420.1 Gene:hbn / 47894 FlyBaseID:FBgn0008636 Length:409 Species:Drosophila melanogaster
Sequence 2:XP_017449515.1 Gene:Vsx2 / 171360 RGDID:621215 Length:380 Species:Rattus norvegicus


Alignment Length:211 Identity:73/211 - (34%)
Similarity:101/211 - (47%) Gaps:32/211 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   115 REDSPTNTDGGLDVDNDDELSSSLNNGHDLSDMERPRKVRRSRTTFTTFQLHQLERAFEKTQYPD 179
            |...|.:|......|::|..||.........:..:.||.||.||.||::||.:||:||.:..|||
  Rat   110 RASGPLDTSQTASSDSEDVSSSDRKMSKSALNQTKKRKKRRHRTIFTSYQLEELEKAFNEAHYPD 174

  Fly   180 VFTREDLAMRLDLSEARVQVWFQNRRAKWRKREKFMNQDKAGYLLPEQGLPEFPL--GIPLPPHG 242
            |:.||.|||:.:|.|.|:||||||||||||||||...:..   ::.|.||....:  .||||...
  Rat   175 VYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRSS---VMAEYGLYGAMVRHSIPLPESI 236

  Fly   243 L-PGHPGSMQS--------EFWPPHFAL--HQHF-------NPAAAAAAGLLPQ---------HL 280
            | ....|.|.|        :.:|..|:.  :|.|       :..|||.:|..|:         ..
  Rat   237 LKSAKDGIMDSCAPWLLVQDGFPRRFSKPEYQQFFLGMHKKSLEAAAESGRKPEVERQVLPKLDK 301

  Fly   281 MAPHYKLPNFHTLLSQ 296
            |....:.|:....:||
  Rat   302 MEQEERAPDAQAAISQ 317

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hbnNP_788420.1 Homeodomain 154..210 CDD:459649 35/55 (64%)
Vsx2XP_017449515.1 Homeodomain 153..205 CDD:459649 32/51 (63%)
OAR 319..337 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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