DRSC/TRiP Functional Genomics Resources

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Protein Alignment hbn and alx1

DIOPT Version :10

Sequence 1:NP_788420.1 Gene:hbn / 47894 FlyBaseID:FBgn0008636 Length:409 Species:Drosophila melanogaster
Sequence 2:XP_002931669.1 Gene:alx1 / 100489661 XenbaseID:XB-GENE-853095 Length:326 Species:Xenopus tropicalis


Alignment Length:259 Identity:80/259 - (30%)
Similarity:110/259 - (42%) Gaps:80/259 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    89 QQQQHSQQQHHSQQQQQQQQLQVQAKREDSPTNTDGG--------------------LDVDN--- 130
            |:.:|..:...:...|........||.|....:|:.|                    :|:|.   
 Frog    57 QRAEHHVRMERASPCQDTNASYGLAKVEGQAVHTELGRPMETCCSLAVSPGKAMADKVDLDELGD 121

  Fly   131 --DDELSSSLNNGHDLSDMERPRKVRRSRTTFTTFQLHQLERAFEKTQYPDVFTREDLAMRLDLS 193
              |..:|||              |.||.|||||:.||.:||:.|:||.||||:.||.||:|.:|:
 Frog   122 KCDSNVSSS--------------KKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELT 172

  Fly   194 EARVQVWFQNRRAKWRKREKF--MNQDKAGY-------LLPE-QGLPEFP--LGIPLPPHG---- 242
            |||||||||||||||||||::  :.|.|:.:       :||. ...|:..  |....|..|    
 Frog   173 EARVQVWFQNRRAKWRKRERYGQIQQAKSHFAATYDISVLPRADSYPQIQNNLWAGNPSGGSVVT 237

  Fly   243 ---LPGHPGSMQSEFW------PPHFALHQHFNPAAAAAAGLLPQHLMAPHYKLPNFHT--LLS 295
               ||..|.:..:.:.      .|:.:...|.|..:              |..|.||.|  |||
 Frog   238 SCMLPREPSACMTPYSHSTRTDSPYTSFTNHQNQFS--------------HVPLNNFFTESLLS 287

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hbnNP_788420.1 Homeodomain 154..210 CDD:459649 39/55 (71%)
alx1XP_002931669.1 Homeodomain 133..189 CDD:459649 39/55 (71%)
OAR 302..320 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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