DRSC/TRiP Functional Genomics Resources

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Protein Alignment Abd-B and bsh

DIOPT Version :10

Sequence 1:NP_524896.2 Gene:Abd-B / 47763 FlyBaseID:FBgn0000015 Length:493 Species:Drosophila melanogaster
Sequence 2:NP_477350.2 Gene:bsh / 35266 FlyBaseID:FBgn0000529 Length:429 Species:Drosophila melanogaster


Alignment Length:410 Identity:109/410 - (26%)
Similarity:151/410 - (36%) Gaps:115/410 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   134 ATTPV---AGALSPA------QTPTGPSAQQQQHLTSPHHQQLPQQQTPNSVASGASSNLQQQQQ 189
            ||||.   |.|::.|      :||........|:|.|..:..  .....|.:|  |::|....:.
  Fly    20 ATTPTHSKAAAMASATTMLTTKTPFSIEHILFQNLNSASNNN--NSSDTNGIA--ANTNNYAPKS 80

  Fly   190 QQNAAVA--------------------PGQTQIVAPTTASVSPSSVSSQK------EDINMSIQL 228
            .:||..:                    |.|:...|..:||.:.::.|:|.      ||...|:..
  Fly    81 SRNAVKSARSAFAHDNNPHKHPSQHSHPPQSHPPASASASATATARSNQAASGYAGEDYGKSMHS 145

  Fly   229 APLHIPAIRAGPGFETDTSAAVKRH-TAHWAYNDEGFNQHYGSGYYDRKHMFAYPYPETQFPVGQ 292
            .|               .|....|| |:|  ||.:..:|..|||.....     |.|.||     
  Fly   146 TP---------------RSNHHSRHGTSH--YNGDQISQQLGSGAAQHP-----PVPTTQ----- 183

  Fly   293 YWGPNYRPDQTTSAAAAAAYMNEAERHVSAAARQSVEGTSTSSYEPPTYSSPGGLR---GY--PS 352
               |...|....:..:.|                    ::...|....|:..|.|:   ||  ||
  Fly   184 ---PQPPPPPPLNGGSGA--------------------SNGVLYPNAPYTDHGFLQMTLGYLSPS 225

  Fly   353 -------ENYSSSGAS---GGLSVGAVGPCTPNPGLHEWTGQVSV-----RKKRKPYSKFQTLEL 402
                   :.|..|.||   |....||.| |.|...|....|..::     ||.|..:|..|...|
  Fly   226 SGTYKSVDPYFLSQASLFGGAPFFGAPG-CVPELALGLGMGVNALRHCRRRKARTVFSDPQLSGL 289

  Fly   403 EKEFLFNAYVSKQKRWELARNLQLTERQVKIWFQNRRMKNKKNSQRQ--ANQQNNNNNSSSNHNH 465
            ||.|....|:|..:|.|||..|.|:|.|||.||||||||:||..:|:  ||:..:.:.|......
  Fly   290 EKRFEGQRYLSTPERVELATALGLSETQVKTWFQNRRMKHKKQLRRRDNANEPVDFSRSEPGKQP 354

  Fly   466 AQATQQHHSGHHLNLSLNMG 485
            .:||..  ||...:..||.|
  Fly   355 GEATSS--SGDSKHGKLNPG 372

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Abd-BNP_524896.2 Homeodomain 388..444 CDD:459649 29/55 (53%)
bshNP_477350.2 Homeodomain 275..331 CDD:459649 29/55 (53%)

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