DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Abd-B and hoxa13b

DIOPT Version :10

Sequence 1:NP_524896.2 Gene:Abd-B / 47763 FlyBaseID:FBgn0000015 Length:493 Species:Drosophila melanogaster
Sequence 2:NP_571269.2 Gene:hoxa13b / 30438 ZFINID:ZDB-GENE-980526-365 Length:289 Species:Danio rerio


Alignment Length:196 Identity:59/196 - (30%)
Similarity:80/196 - (40%) Gaps:36/196 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   284 PETQFPVGQYWGPNYRPDQTTSAAAAAAYMNEAERHVSAAARQ---------SVEGTSTSSYEP- 338
            |....|.| |:|.:|.|.:...:........|.....|.:..:         ..:|.|:..|:| 
Zfish    86 PSASLPYG-YFGGSYYPCRMPKSCTQPTTYGEKYMDTSVSGEEFPSRAKEFAFYQGYSSGPYQPV 149

  Fly   339 ---------PTYSSPGGLRG---YPSENYSSSGASGGLSVGAVGPCTPNPGLHEW---------- 381
                     |..|:|...|.   .|.|.|.....:.|.|.....|.........|          
Zfish   150 PSYLDVPVVPALSAPSEPRHESLLPVETYQPWAITNGWSSPVYCPKDQTQSSTLWKSSIQDTVSG 214

  Fly   382 TGQVSV---RKKRKPYSKFQTLELEKEFLFNAYVSKQKRWELARNLQLTERQVKIWFQNRRMKNK 443
            |...||   ||||.||:|.|..|||:|:..|.:::|.||..::.:..||||||.|||||||:|.|
Zfish   215 TDGASVRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISAHTNLTERQVTIWFQNRRVKEK 279

  Fly   444 K 444
            |
Zfish   280 K 280

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Abd-BNP_524896.2 Homeodomain 388..444 CDD:459649 30/55 (55%)
hoxa13bNP_571269.2 HoxA13_N 27..131 CDD:463521 9/45 (20%)
Homeodomain 224..280 CDD:459649 30/55 (55%)

Return to query results.
Submit another query.