DRSC/TRiP Functional Genomics Resources

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Protein Alignment Abd-B and CG30480

DIOPT Version :10

Sequence 1:NP_524896.2 Gene:Abd-B / 47763 FlyBaseID:FBgn0000015 Length:493 Species:Drosophila melanogaster
Sequence 2:NP_725409.1 Gene:CG30480 / 246640 FlyBaseID:FBgn0050480 Length:920 Species:Drosophila melanogaster


Alignment Length:270 Identity:59/270 - (21%)
Similarity:90/270 - (33%) Gaps:75/270 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 HAHHHLPQPLHTTSHHHSAHPHLQQQQQQQQHAVVASSPSSVLQQQQQQSTPTTHSTPTHAVMYE 98
            |.|||         |||..|.|    .::|::..|.::...:|.:...:|....|    |.....
  Fly    42 HRHHH---------HHHRHHHH----HERQENVEVVATEEVILVENAPKSRKHHH----HKQRTS 89

  Fly    99 DPPPVPLV--------------------AVQQQHLPAPQQQQQLQQQQQ--QQQQQLATTPVAGA 141
            .|||:|..                    |...|..|.|.....|.|..:  ...:.:.||..:..
  Fly    90 PPPPLPQTSPPFLTPTEEVGFNVVWEPQAFWNQPSPNPSTDLDLSQDNEVVDAVETMDTTSASDE 154

  Fly   142 LSPA--QTPTGPSAQQQQHLTSPHHQQL--------PQQQTPNSVASGASSNLQQQQQQQNAAVA 196
            .:..  |:.|..|.::.|..|....:::        |....|..|.:|.....||......|.|.
  Fly   155 FTTVVFQSETKESIRETQKHTRVVEEEIIIDQLDPPPYAPPPLQVQTGFFPVAQQPPLSPIAEVV 219

  Fly   197 PGQTQIVA-------PTTA-----SVSPSS--VSSQKEDINMSIQLAPLHIPAIRAGPGF----- 242
              ||.:||       |.|.     ::.|:.  |.:.:..:...||..|..||.    |||     
  Fly   220 --QTDVVAESVEPPLPPTGYIPRINLKPTETIVENVEVIVPAQIQQEPEFIPQ----PGFVARIV 278

  Fly   243 -ETDTSAAVK 251
             ..:.:||.|
  Fly   279 ENIEVAAASK 288

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Abd-BNP_524896.2 Homeodomain 388..444 CDD:459649
CG30480NP_725409.1 None
Blue background indicates that the domain is not in the aligned region.

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