Protein Alignment Abd-B and Hoxd8

DIOPT Version :10

• Sequence 1: NP_524896.2
• Gene: Abd-B / 47763
• FlyBaseID: FBgn0000015
• Length: 493
• Species: Drosophila melanogaster
• Sequence 2: NP_001386684.1
• Gene: Hoxd8 / 100912936
• RGDID: 6489440
• Length: 292
• Species: Rattus norvegicus
• Alignment Length: 300
• Identity: 84/300 - (28%)
• Similarity: 120/300 - (40%)
• Gaps: 91/300 - (30%)

  Fly   195 VAPGQTQIVAPTTASVSPSSVSSQKEDINMSIQLAPLHIPAIRAGPGFETDTSAAVKRHTAHWAY 259
            |.|..::..|...|:.:.::.::..|.||      |.:...     .|..:.|.   ||.|..
  Rat     6 VNPLYSKYKAAAAAAAAAAAAAAAGEAIN------PTYYDC-----HFAPEVSG---RHAAAL-- 54

  Fly   260 NDEGFNQHYGSGYYDRKH----MFAYPYPETQFPVGQYWGPNYRPDQTTSAAAAAAYMNEAERHV 320
                  |.||:......|    ..|:|:|......|...||.  |.|....|.|
  Rat    55 ------QLYGNSAAGFPHAPPQAHAHPHPSPPPGCGGGGGPG--PGQNYFHAGA----------- 100

  Fly   321 SAAARQSVEGTSTSSYE----PPTYSSP-------GGL--RGYPSENY----------------- 355
                     |:..::|:    ||.:..|       ||:  .|.|::.|
  Rat   101 ---------GSPVAAYQAAPPPPPHPPPPPPPPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEA 156

  Fly   356 ---------SSSGASGGLSVGAVGPCTPNPGLHEWTGQVSV---RKKRKPYSKFQTLELEKEFLF 408
                     ||||..|..........:|:. :..|....:.   |:.|:.||:||||||||||||
  Rat   157 ELVQYPDCKSSSGNIGEDPDHLNQSSSPSQ-MFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLF 220

  Fly   409 NAYVSKQKRWELARNLQLTERQVKIWFQNRRMKNKKNSQR 448
            |.|:::::|.|::..|.||||||||||||||||.||.:.|
  Rat   221 NPYLTRKRRIEVSHTLALTERQVKIWFQNRRMKWKKENNR 260

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Abd-B	NP_524896.2	Homeodomain	388..444	CDD:459649	37/55 (67%)
Hoxd8	NP_001386684.1	COG5576	143..276	CDD:227863	46/118 (39%)
		Homeodomain	200..256	CDD:459649	37/55 (67%)