Protein Alignment repo and Ubx

DIOPT Version :10

• Sequence 1: NP_477026.1
• Gene: repo / 47285
• FlyBaseID: FBgn0011701
• Length: 612
• Species: Drosophila melanogaster
• Sequence 2: NP_536752.1
• Gene: Ubx / 42034
• FlyBaseID: FBgn0003944
• Length: 389
• Species: Drosophila melanogaster
• Alignment Length: 442
• Identity: 100/442 - (22%)
• Similarity: 131/442 - (29%)
• Gaps: 201/442 - (45%)

  Fly     3 HDSFDDPIFGEFGGGPLNPLGAKPL----MPTTTAMHPVMLGSVHELCSQQQQQQQQQRLPDC-- 61
            ||.........:.|.||: ||..|.    :..||...|.. .|:...|::...........||
  Fly    29 HDQTASAAAAAYRGFPLS-LGMSPYANHHLQRTTQDSPYD-ASITAACNKIYGDGAGAYKQDCLN 91

  Fly    62 -------------NTILPNGGGGGAGSGGAGGS-----PNYVTKLDFVNKMGCYSPSQKYEYISA 108
                         ||...||||||.|.||.||:     .......:..|..|..:|:.     ..
  Fly    92 IKADAVNGYKDIWNTGGSNGGGGGGGGGGGGGAGGTGGAGNANGGNAANANGQNNPAG-----GM 151

  Fly   109 PQKLVEQQQQQQHHHQHHQHYTATPPPSHNGILLHKQSSQQQQQQQQQLVGILDYHPLNGKLDYS 173
            |.:                 .:|..|.|..|                            |.||.|
  Fly   152 PVR-----------------PSACTPDSRVG----------------------------GYLDTS 171

  Fly   174 SSPKDQYEPQQLQHLYGGSPHHLDHLDHGSDGLLQDSSPVMINGGSAGGKLKKPDEMCSQLEAGG 238
                            ||                   |||...||||||.:.
  Fly   172 ----------------GG-------------------SPVSHRGGSAGGNVS------------- 188

  Fly   239 AGVTPPSSSSTVVNGTTNGTGNANSSSSAGVGIQGAAGTA-------GGVAAPAA---------- 286
                        |:|   |.|||....| |||:.| ||||       .|.||..|
  Fly   189 ------------VSG---GNGNAGGVQS-GVGVAG-AGTAWNANCTISGAAAQTAAASSLHQASN 236

  Fly   287 -------------KKDGSSSKKKGD-----------------------------PNGIKKKKTRT 309
                         .:|.:.||.:.|                             .||: :::.|.
  Fly   237 HTFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGL-RRRGRQ 300

  Fly   310 TFTAYQLEELERAFERAPYPDVFAREELAIKLNLSESRVQVWFQNRRAKWRK 361
            |:|.||..|||:.|....|.....|.|:|..|.|:|.::::||||||.|.:|
  Fly   301 TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 352

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
repo	NP_477026.1	Homeodomain	313..361	CDD:459649	20/47 (43%)
Ubx	NP_536752.1	Homeodomain	296..352	CDD:459649	23/55 (42%)