Protein Alignment repo and Shox2

DIOPT Version :10

• Sequence 1: NP_477026.1
• Gene: repo / 47285
• FlyBaseID: FBgn0011701
• Length: 612
• Species: Drosophila melanogaster
• Sequence 2: NP_037160.2
• Gene: Shox2 / 25546
• RGDID: 3674
• Length: 331
• Species: Rattus norvegicus
• Alignment Length: 333
• Identity: 90/333 - (27%)
• Similarity: 130/333 - (39%)
• Gaps: 87/333 - (26%)

  Fly   209 DSSPVMINGGSAGGKLK--KPDEMCSQLEAGGAGVTPPSSSSTVVNGTTNGTGNANSSSSAGVGI 271
            :|.|  :.|....|.::  :.|.....:.|.|.|            |...|.|........|.|.
  Rat    30 ESGP--LRGAKEPGCVEPGRDDRSSPAVRAAGGG------------GGAGGGGGGGGGGGGGAGG 80

  Fly   272 QGAAGTAGGVAAPAAKKDGSSSKKKGDPNG---------------------------IKKKKTRT 309
            .||.|.|||..:|..:.|..::::..:|..                           ||::::||
  Rat    81 GGAGGGAGGGRSPVRELDMGAAERSREPGSPRLTEVSPELKDRKEDAKGMEDEGQTKIKQRRSRT 145

  Fly   310 TFTAYQLEELERAFERAPYPDVFAREELAIKLNLSESRVQVWFQNRRAKWRKHEPPRKTGYIKTS 374
            .||..||.||||.|:...|||.|.||||:.:|.|||:||||||||||||.||.|.....|.:..:
  Rat   146 NFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQLHKGVLIGA 210

  Fly   375 TPP------TATLNPGTLAPPFTSYPQTTTVTPPG-------SMDSWTSYQTPYELTPQFSLLSP 426
            ...      ...:|.|.|..|| .......|||..       .:||..:: ..:.|.|..:
  Rat   211 ASQFEACRVAPYVNVGALRMPF-QQDSHCNVTPLSFQVQAQLQLDSAVAH-AHHHLHPHLA---- 269

  Fly   427 AASPYGTYSGQYGAYVHESQLFPMRHYEYGSPTRMEMGATTGSVAGNGDESVANGGSYQTAELQT 491
            |.:||              .:||..  .:|.|.     ||..:.:.:....||...:.:|    |
  Rat   270 AHAPY--------------MMFPAP--PFGLPL-----ATLAADSASAASVVAAAAAAKT----T 309

  Fly   492 AQQQQLAD 499
            ::...:||
  Rat   310 SKNSSIAD 317

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
repo	NP_477026.1	Homeodomain	313..361	CDD:459649	31/47 (66%)
Shox2	NP_037160.2	Homeodomain	141..197	CDD:459649	35/55 (64%)
		OAR	311..327	CDD:461067	2/7 (29%)