DRSC/TRiP Functional Genomics Resources

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Protein Alignment repo and Pitx1

DIOPT Version :10

Sequence 1:NP_477026.1 Gene:repo / 47285 FlyBaseID:FBgn0011701 Length:612 Species:Drosophila melanogaster
Sequence 2:NP_446076.1 Gene:Pitx1 / 113983 RGDID:69253 Length:315 Species:Rattus norvegicus


Alignment Length:345 Identity:93/345 - (26%)
Similarity:130/345 - (37%) Gaps:126/345 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   193 PHHLD---HLDHGSD------GLLQDSSPVMINGGSAGGKLKKPDEMCSQLEAGGAGVTPPSSSS 248
            ||.:.   ||...:|      ....:||...:.....||:.|.|::       ||||        
  Rat    24 PHDMGPSFHLARTADPREPLENSASESSDADLPDKERGGEAKVPED-------GGAG-------- 73

  Fly   249 TVVNGTTNGTGNANSSSSAGVGIQGAAGTAGGVAAPAAKKDGSSSKKKGDPNGIKKKKTRTTFTA 313
                             |||         .|....||.||              |:::.||.||:
  Rat    74 -----------------SAG---------CGSAEDPAKKK--------------KQRRQRTHFTS 98

  Fly   314 YQLEELERAFERAPYPDVFAREELAIKLNLSESRVQVWFQNRRAKWRKHEPPR-----KTGYI-- 371
            .||:|||..|:|..|||:..|||:|:..||:|.||:|||:||||||||.|..:     |.||:  
  Rat    99 QQLQELEATFQRNRYPDMSMREEIAVWTNLTEPRVRVWFKNRRAKWRKRERNQQLDLCKGGYVPQ 163

  Fly   372 ------------------------KTSTP-PTAT--------LNPGTLAPPFTSYPQTTTVTPPG 403
                                    |:..| |.:|        ::|.:....|::....:::|.|.
  Rat   164 FSGLVQPYEDVYAAAGYSYNNWAAKSLAPAPLSTKSFTFFNSMSPLSSQSMFSAPSSISSMTMPS 228

  Fly   404 SMDSWTSYQTP-------YELTPQF--SLLSPAASPYGTYSGQYGAY--VHESQLFPMR-----H 452
            ||...:....|       ..||...  |.:||.|.||||.:..|..|  ...|.|..:|     |
  Rat   229 SMGPGSVPGMPNSGLNNINNLTGSSLNSAMSPGACPYGTPASPYSVYRDTCNSSLASLRLKSKQH 293

  Fly   453 YEYGSPTRMEMGATTGSVAG 472
            ..:|      .|...|..:|
  Rat   294 SSFG------YGGLQGPASG 307

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
repoNP_477026.1 Homeodomain 313..361 CDD:459649 28/47 (60%)
Pitx1NP_446076.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..103 30/133 (23%)
Homeodomain 90..146 CDD:459649 32/55 (58%)
Interaction with PIT-1. /evidence=ECO:0000250 149..280 26/130 (20%)
OAR 277..294 CDD:461067 3/16 (19%)
OAR. /evidence=ECO:0000255|PROSITE-ProRule:PRU00138 281..294 3/12 (25%)
Nuclear localization signal. /evidence=ECO:0000255 287..291 1/3 (33%)

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