DRSC/TRiP Functional Genomics Resources

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Protein Alignment PolZ1 and pold1

DIOPT Version :10

Sequence 1:NP_524881.2 Gene:PolZ1 / 47186 FlyBaseID:FBgn0002891 Length:2130 Species:Drosophila melanogaster
Sequence 2:NP_001039204.1 Gene:pold1 / 734063 XenbaseID:XB-GENE-1002131 Length:1109 Species:Xenopus tropicalis


Alignment Length:962 Identity:256/962 - (26%)
Similarity:412/962 - (42%) Gaps:176/962 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly  1207 GKSRLKRGTRLSFIGSQDEEPPSSQSSEQSVSSSAAQAELDRSSFLRQLEGSSQDRQHDLSFGLS 1271
            ||.||::       .||||.|    |.|.....|.||.|:|.|             ..||   :|
 Frog   265 GKYRLRK-------ESQDEGP----SKENPSKVSLAQIEVDIS-------------WADL---IS 302

  Fly  1272 HATLDNTFGFKVNLENLQQAKADIDCNHLTIITLEVFVSTRGDLQPDPMHDEIRCLFYAIEHSLP 1336
            |.    ..|....:..|:....||:|            :.|..:.|:|..|.:            
 Frog   303 HP----AEGDWQKIAPLRVLSFDIEC------------AGRKGVFPEPDKDPV------------ 339

  Fly  1337 DEKLPSKACGYIMVNTVQDLLSEGPFHGIDRDIEV-----QVVTSEAEAFEALLALCERW----- 1391
                         :.....:|.:|......|::..     .:|.|:...|:...||.:.|     
 Frog   340 -------------IQIANMVLRQGEKDAFIRNVFTLGTCSSIVGSQVLCFDREDALLKAWADFVR 391

  Fly  1392 --DADIYAGYEIEMSSWGYVIDRAKHLCFNIAPLLSRVPTQK--VRDFVDEDREQFTDLDVEMKL 1452
              |.||..||.|:.....|:|:||:.|.....|.|.|:.:.|  :||...:.::.....:..:..
 Frog   392 TIDPDIITGYNIQNFDMPYLINRAQTLKVPNFPFLGRIRSMKSVIRDSSFQSKQMGRRENKVINT 456

  Fly  1453 CGRILLDVWRLMRSEIALTSYTFENVMYHILHKRCPWHTAKSLTE-WFGSPCTRWIVMEYYLERV 1516
            .||:..|:.:::..:..|.|||...|.:|.|.::........:|: ..|:..||..:..|.|:..
 Frog   457 EGRVQFDLLQVLLRDYKLRSYTLNAVSFHFLQEQKEDVQHSIITDLQNGNEQTRRRLAVYCLKDA 521

  Fly  1517 RGTLTLLDQLDLLGRTSEMAKLIGIQFYEVLSRGSQFRVESMMLRIAKPKNLVPLSPSVQARAHM 1581
            ...|.|:::|..:....|||::.|:....:||||.|.:|.|.:||.|..::||  .|.|::..  
 Frog   522 YLPLRLMEKLMCVINYMEMARVTGVPLSYLLSRGQQIKVVSQLLRQAMKQDLV--MPVVKSEG-- 582

  Fly  1582 RAPEYL-ALIMEPQSRFYADPLIVLDFQSLYPSMIIAYNYCFSTCL--GRVEHLGGSSPFEFGAS 1643
             ..:|. |.::||...:|..|:..|||.|||||:::|:|.|::|.|  |.::.. |.||.:|   
 Frog   583 -GEDYTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLQSGSIDKY-GLSPEDF--- 642

  Fly  1644 QLRVSRQMLQKLLEHDLVTVSPCGVVFVKREVREGILPRMLTEILDTRQMVKQSMKLHKDSSALQ 1708
                              ..:|.|..|||..:|:|:||.:|..:|..|:..|..:|...|... |
 Frog   643 ------------------IKTPTGDCFVKASIRKGLLPEILENLLCARKRAKAELKKETDPFK-Q 688

  Fly  1709 RILHSRQLGLKLMANVTYGYTAANFSGRMPSVEVGDSVVSKGRETLERAIKLVE------NNEEW 1767
            ::|..|||.||:.||..||:|.|.. |::|.:|:..||...||:.:|:..:|||      |..:.
 Frog   689 KVLDGRQLALKVSANSVYGFTGAQV-GKLPCLEISQSVTGFGRQMIEKTKQLVESKYTLDNGYKA 752

  Fly  1768 KVRVVYGDTDSMFVLVPGRNRAEAFRIGEEIAKAVTEMNPQPVKLKLEKVYQPCMLQTKKRYVGY 1832
            ..:|:||||||:...:..:...||..||.|.|:.|:.....|:||:.||||.|.:|..||||.|.
 Frog   753 DAKVIYGDTDSVMCKLGVQTVVEAMEIGREAAEWVSSHFTPPIKLEFEKVYFPYLLINKKRYAGL 817

  Fly  1833 MYETADQEQPVYEAKGIETVRRDGCPAVAKMLEKVLRILFETQDVSKIKAYVCRQFTKLLSGRAN 1897
            .:.::.......:.|||||||||.||.||.::...|:.:...:|......:.....:.||..|.:
 Frog   818 YFSSSANTHDKMDCKGIETVRRDNCPLVANLINTCLQKILIDRDPMGAVEHAKDVISDLLCNRID 882

  Fly  1898 LQDLIFAK-------EFRGLNGYKPTACVPALELTRKWMQKDPRHVPRRGERVPFIIVNGPPGMQ 1955
            :..|:..|       |:.|...:        :||..:..::||...|..|:|||::|:....|:.
 Frog   883 ISQLVITKELTRTADEYAGKQAH--------VELAERMRKRDPGSAPNLGDRVPYVIIGAAKGVA 939

  Fly  1956 LIRLVRSPHDILANEGHKINAIYYITKAIIPPLNR------------CLLLIGANVHDWFASLPR 2008
            .......|..:|.| ...|:..||:.:.:..||.|            .:||.|.:..       .
 Frog   940 AYMKSEDPIYVLEN-NIPIDTQYYLEQQLAKPLLRIFEPILGESKAESILLKGEHTR-------C 996

  Fly  2009 KLLMTPAVGTANELAGAR----GAKSTISQYFSTTSCVIDCGRQTKAGICPDCLKNATTCVVVLS 2069
            |.::|..||.....|..|    |.|:|::.               ...:|..|.:..:..:....
 Frog   997 KTVLTAKVGGLMAFAKKRSTCIGCKATLNH---------------DGAVCNYCKQRESELIQKEI 1046

  Fly  2070 DKTARLERGYQLTRQICQACCGRL-GSLQCDSLDCPVLYVLEGKRRELQQIE 2120
            .:.:.||..:......||.|.|.| ..:.|.|.|||:.|:.:..:::|...|
 Frog  1047 SQLSGLEEKFSRLWTQCQRCQGSLHEDVLCTSRDCPIFYMRKKVQKDLDDQE 1098

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PolZ1NP_524881.2 PTZ00166 20..>196 CDD:240301
DNA_polB_zeta_exo 1297..1518 CDD:99821 47/235 (20%)
POLBc_zeta 1550..2000 CDD:99917 148/477 (31%)
zf-C4pol 2041..2107 CDD:464119 14/66 (21%)
pold1NP_001039204.1 PTZ00166 76..1105 CDD:240301 256/962 (27%)
Blue background indicates that the domain is not in the aligned region.

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