DRSC/TRiP Functional Genomics Resources

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Protein Alignment cpo and AT3G21215

DIOPT Version :10

Sequence 1:NP_001014632.3 Gene:cpo / 45840 FlyBaseID:FBgn0263995 Length:962 Species:Drosophila melanogaster
Sequence 2:NP_683582.2 Gene:AT3G21215 / 821675 AraportID:AT3G21215 Length:339 Species:Arabidopsis thaliana


Alignment Length:392 Identity:94/392 - (23%)
Similarity:140/392 - (35%) Gaps:147/392 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   439 EEVRTLFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTASPVGFVTFHTRAGAEAAKQD 503
            :|:||:|::|||.|.|.|||..|.|...|||.|.:     |.|...|:||..|.|...|.|||..
plant    56 DELRTIFIAGLPDDVKERELLNLLRWLPGYEASQV-----NFKGEKPMGFALFSTAQFAMAAKDT 115

  Fly   504 LQGVRFDPDMPQTIRLEFAKSNTKVSK----------PKPQPNTATTASHPALMHPLTGHLGGPF 558
            ||.:.||.:....|..|.||.|..|.:          ...:..|....:| ::..|      .||
plant   116 LQHMVFDAESKSVIHTEMAKKNLFVKRGIVGDSNAYDQSKRLRTGGDCTH-SVYSP------SPF 173

  Fly   559 FPGGPELWHHPLAYSAAAAAELPGAAALQHATLVHPALHPQVPVRSYLXLNTDKVMEQPMHQTQM 623
            .|..|.:|..|..|.|                   ||..|..|...|             |...:
plant   174 HPPPPPVWGPPHGYMA-------------------PAPPPYDPYAGY-------------HAPPV 206

  Fly   624 TMPPHHQTTAIHPGAAMAHMAAAAAAAAAGGGGGAATAAAAPQSAAATAAAAAAASHHHYLSSPA 688
            .||                                                          :.|.
plant   207 PMP----------------------------------------------------------TPPP 213

  Fly   689 LASPAGSTNNASHPGNPQIAANAPCSTLFVANLGQFVSEHELKEVFSSMPGFCRLRMHTKAMATA 753
            :|:|      :|:.....|..|.||:|||:.|||:.::|.||:.:.|:.|||.::::..:     
plant   214 IAAP------SSYVPVQNIKDNPPCNTLFIGNLGENINEEELRSLLSAQPGFKQMKILRQ----- 267

  Fly   754 TGSSCSTSNGSGSSSNSNHNSAAVQQHPVAFIEFKDPPTASQAMQQLQGKYLLSSDRGSIRIEFA 818
                                    ::|.|.||||:|..:|:.....|||..:.||....:||:::
plant   268 ------------------------ERHTVCFIEFEDVNSATNVHHNLQGAVIPSSGSIGMRIQYS 308

  Fly   819 RS 820
            ::
plant   309 KN 310

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cpoNP_001014632.3 RRM_cpo 441..523 CDD:410085 34/81 (42%)
RRM_scw1_like 712..819 CDD:409691 30/106 (28%)
AT3G21215NP_683582.2 RRM_RBPMS_like 59..132 CDD:409854 33/77 (43%)
RRM_SF 231..309 CDD:473069 30/106 (28%)

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