DRSC/TRiP Functional Genomics Resources

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Protein Alignment cpo and AT3G13700

DIOPT Version :10

Sequence 1:NP_001014632.3 Gene:cpo / 45840 FlyBaseID:FBgn0263995 Length:962 Species:Drosophila melanogaster
Sequence 2:NP_187983.1 Gene:AT3G13700 / 820579 AraportID:AT3G13700 Length:296 Species:Arabidopsis thaliana


Alignment Length:411 Identity:100/411 - (24%)
Similarity:136/411 - (33%) Gaps:185/411 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly   441 VRTLFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTA---------------SPVGFVT 490
            :.||||||||.|.|.||::.|||...|:|...||.|.:..:..               :.|.|.|
plant    36 INTLFVSGLPNDVKAREIHNLFRRRHGFESCQLKYTGRGDQVCKNLQFLFFFIPIFRKAVVAFAT 100

  Fly   491 FHTRAGAEAAKQDLQGVRFDPDMPQTIRLEFAKSNTKVSKPKPQPNTATTASHPALMHPLTGHLG 555
            |.:...|.||..:|.||:|||.....:.:|.|:||   |:.|.:|.:                  
plant   101 FTSHRFALAAMNELNGVKFDPQTGSNLHIELARSN---SRRKERPGS------------------ 144

  Fly   556 GPFF--------------------PGGPELWHHPLAYSAAAAAELPGAAALQHATLVHPALHPQV 600
            ||:.                    ...|:            ..:.||                  
plant   145 GPYVVIDNRNKEISKSQDDQSDEGDSDPD------------EVQEPG------------------ 179

  Fly   601 PVRSYLXLNTDKVMEQPMHQTQMTMPPHHQTTAIHPGAAMAHMAAAAAAAAAGGGGGAATAAAAP 665
                    |:|.             |..:.||                         .:.|.:.|
plant   180 --------NSDS-------------PKENDTT-------------------------KSEADSEP 198

  Fly   666 QSAAATAAAAAAASHHHYLSSPALASPAGSTNNASHPGNPQIAANAPCSTLFVANLGQFVSEHEL 730
            .|.|.:|                    .|....||..|:   .|.| |||||:||||...:|.||
plant   199 DSKAPSA--------------------NGHLEKASEGGS---GARA-CSTLFIANLGPNCTEDEL 239

  Fly   731 KEVFSSMPGFCRLRMHTKAMATATGSSCSTSNGSGSSSNSNHNSAAVQQHPVAFIEFKDPPTASQ 795
            |::.|..|||..|::.      |.|..                       ||||.:|::...|:.
plant   240 KQLLSRYPGFHILKIR------ARGGM-----------------------PVAFADFEEIEQATD 275

  Fly   796 AMQQLQGKYLLSSDRGSIRIE 816
            ||..|||..|.|||||.:.||
plant   276 AMNHLQGNLLSSSDRGGMHIE 296

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cpoNP_001014632.3 RRM_cpo 441..523 CDD:410085 34/96 (35%)
RRM_scw1_like 712..819 CDD:409691 39/105 (37%)
AT3G13700NP_187983.1 RRM_SF 38..130 CDD:473069 33/91 (36%)
RRM_scw1_like 221..296 CDD:409691 38/104 (37%)

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