DRSC/TRiP Functional Genomics Resources

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Protein Alignment cpo and AT2G42240

DIOPT Version :10

Sequence 1:NP_001014632.3 Gene:cpo / 45840 FlyBaseID:FBgn0263995 Length:962 Species:Drosophila melanogaster
Sequence 2:NP_001078040.1 Gene:AT2G42240 / 818824 AraportID:AT2G42240 Length:302 Species:Arabidopsis thaliana


Alignment Length:392 Identity:96/392 - (24%)
Similarity:133/392 - (33%) Gaps:171/392 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly   439 EEVRTLFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTASPVGFVTFHTRAGAEAAKQD 503
            :|||||||:|||.|.||||:|.|||.:.|||.|.|:  |.:|  |.|..|..|.....|.|....
plant    47 DEVRTLFVAGLPEDVKPREIYNLFREFPGYETSHLR--SSDG--AKPFAFAVFSDLQSAVAVMHA 107

  Fly   504 LQGVRFDPDMPQTIRLEFAKSNTKVSKPKPQP-----------NTATTASHPALMHPLTGHLGGP 557
            |.|:.||.:...|:.::.||||.|..:.:...           ||.|.:..            |.
plant   108 LNGMVFDLEKHSTLHIDLAKSNPKSKRSRTDDGWESLKKLKSWNTTTESGF------------GS 160

  Fly   558 F-FPGGPELWHHPLAYSAAAAAELPGAAALQHATLVHPALHPQVPVRSYLXLNTDKVMEQPMHQT 621
            | .||.....::.:.||.|                                            |:
plant   161 FQTPGMSSSAYNTIGYSPA--------------------------------------------QS 181

  Fly   622 QMTMPPHHQTTAIHPGAAMAHMAAAAAAAAAGGGGGAATAAAAPQSAAATAAAAAAASHHHYLSS 686
            |                                 |.|..|..||.|...:.||            
plant   182 Q---------------------------------GIANVAGRAPTSRKPSKAA------------ 201

  Fly   687 PALASPAGSTNNASHPGNPQIAANAPCSTLFVANLGQFVSEHELKEVFSSMPGFCRLRMHTKAMA 751
                                    .||.|||:||:|...:|.||.:|||...||.:|::      
plant   202 ------------------------DPCPTLFIANMGPNCTEAELIQVFSRCRGFLKLKI------ 236

  Fly   752 TATGSSCSTSNGSGSSSNSNHNSAAVQQHPVAFIEFKDPPTASQAMQQLQGKYLLSSDRGSI-RI 815
                        .|:...           ||||::|:|...:|:|:..|||..|.||..|.: |:
plant   237 ------------QGTYGT-----------PVAFVDFQDVSCSSEALHTLQGTVLYSSLTGEVLRL 278

  Fly   816 EF 817
            ::
plant   279 QY 280

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cpoNP_001014632.3 RRM_cpo 441..523 CDD:410085 36/81 (44%)
RRM_scw1_like 712..819 CDD:409691 34/107 (32%)
AT2G42240NP_001078040.1 RRM_SF 50..124 CDD:473069 35/77 (45%)
RRM_SF 203..280 CDD:473069 34/105 (32%)

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