DRSC/TRiP Functional Genomics Resources

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Protein Alignment cpo and Rbpms2

DIOPT Version :10

Sequence 1:NP_001014632.3 Gene:cpo / 45840 FlyBaseID:FBgn0263995 Length:962 Species:Drosophila melanogaster
Sequence 2:NP_082306.2 Gene:Rbpms2 / 71973 MGIID:1919223 Length:206 Species:Mus musculus


Alignment Length:183 Identity:94/183 - (51%)
Similarity:113/183 - (61%) Gaps:36/183 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   438 EEEVRTLFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTASPVGFVTFHTRAGAEAAKQ 502
            |||||||||||||:|.||||||||||.::||||||:|:||:     .|||||.|.:||||||||.
Mouse    21 EEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSR-----QPVGFVIFDSRAGAEAAKN 80

  Fly   503 DLQGVRFDPDMPQTIRLEFAKSNTKVSKPK----PQPNTATTASHPALMHPLTGH-----LGGPF 558
            .|.|:||||:.|||:||||||:|||::|.|    |.|    |:.||||...|...     :|...
Mouse    81 ALNGIRFDPENPQTLRLEFAKANTKMAKSKLIATPNP----TSVHPALGAHLIARDPYDLMGTAL 141

  Fly   559 FPGGPELW-HHPLAYSAAAAAELPGAAALQHATLVHPA----------LHPQV 600
            .|..||.| .:|| |:    .||  ..|:.|.|..:||          ||.||
Mouse   142 IPASPEAWAPYPL-YT----TEL--TPAISHTTFTYPAATAAAAAAATLHAQV 187

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cpoNP_001014632.3 RRM_cpo 441..523 CDD:410085 57/81 (70%)
RRM_scw1_like 712..819 CDD:409691
Rbpms2NP_082306.2 RRM_RBPMS2 24..99 CDD:410084 55/79 (70%)
Important for homodimerization. /evidence=ECO:0000250|UniProtKB:Q6ZRY4 35..45 8/9 (89%)
Blue background indicates that the domain is not in the aligned region.

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