DRSC/TRiP Functional Genomics Resources

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Protein Alignment cpo and Rbpms2

DIOPT Version :10

Sequence 1:NP_001014632.3 Gene:cpo / 45840 FlyBaseID:FBgn0263995 Length:962 Species:Drosophila melanogaster
Sequence 2:NP_001166897.1 Gene:Rbpms2 / 503214 RGDID:1561222 Length:210 Species:Rattus norvegicus


Alignment Length:181 Identity:94/181 - (51%)
Similarity:113/181 - (62%) Gaps:34/181 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   438 EEEVRTLFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTASPVGFVTFHTRAGAEAAKQ 502
            |||||||||||||:|.||||||||||.::||||||:|:||:     .|||||.|.:||||||||.
  Rat    27 EEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSR-----QPVGFVIFDSRAGAEAAKN 86

  Fly   503 DLQGVRFDPDMPQTIRLEFAKSNTKVSKPK----PQPNTATTASHPALMHPLTGH-----LGGPF 558
            .|.|:||||:.|||:||||||:|||::|.|    |.|    |:.||||...|...     :|...
  Rat    87 ALNGIRFDPENPQTLRLEFAKANTKMAKSKLIATPNP----TSVHPALGAHLIARDPYDLMGAAL 147

  Fly   559 FPGGPELW-HHPLAYSAAAAAELPGAAALQHATLVHP--------ALHPQV 600
            .|..||.| .:|| |:    .||  ..|:.|.|..:|        |||.||
  Rat   148 IPASPEAWAPYPL-YT----TEL--TPAISHTTFTYPAATAAAAAALHAQV 191

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cpoNP_001014632.3 RRM_cpo 441..523 CDD:410085 57/81 (70%)
RRM_scw1_like 712..819 CDD:409691
Rbpms2NP_001166897.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..25
RRM_RBPMS2 30..105 CDD:410084 55/79 (70%)
Important for homodimerization. /evidence=ECO:0000250|UniProtKB:Q6ZRY4 41..51 8/9 (89%)
Blue background indicates that the domain is not in the aligned region.

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