DRSC/TRiP Functional Genomics Resources

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Protein Alignment cpo and rbpms2b

DIOPT Version :10

Sequence 1:NP_001014632.3 Gene:cpo / 45840 FlyBaseID:FBgn0263995 Length:962 Species:Drosophila melanogaster
Sequence 2:NP_956553.1 Gene:rbpms2b / 393229 ZFINID:ZDB-GENE-040426-741 Length:200 Species:Danio rerio


Alignment Length:192 Identity:98/192 - (51%)
Similarity:112/192 - (58%) Gaps:37/192 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   425 LSQSMDSV--NTASNEEEVRTLFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTASPVG 487
            :|...||.  |..|.|||||||||||||.|.||||||||||.::||||||:|:|||     .|||
Zfish     1 MSVKSDSEPNNNVSLEEEVRTLFVSGLPTDIKPRELYLLFRPFKGYEGSLIKLTSK-----QPVG 60

  Fly   488 FVTFHTRAGAEAAKQDLQGVRFDPDMPQTIRLEFAKSNTKVSKPKPQPNTATTASHPAL------ 546
            ||||.:|:||||||..|.||||||:.|||:||||||:|||::|.|.......|..||||      
Zfish    61 FVTFDSRSGAEAAKNALNGVRFDPENPQTLRLEFAKANTKMAKSKLMGTPNPTNIHPALGAHFIA 125

  Fly   547 --MHPLTGHLGGPFFPGGPELW---------------HHPLAYSAAAAAELPGAAALQHATL 591
              .:.||   |....|..||.|               |....|.|||||    |||..||.:
Zfish   126 RDPYDLT---GAALIPASPEAWSPYPLYTPELSPGLPHTAFTYPAAAAA----AAAALHAQM 180

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cpoNP_001014632.3 RRM_cpo 441..523 CDD:410085 59/81 (73%)
RRM_scw1_like 712..819 CDD:409691
rbpms2bNP_956553.1 RRM_RBPMS2 19..94 CDD:410084 57/79 (72%)
ELAV_HUD_SF <22..>188 CDD:273741 87/171 (51%)
Blue background indicates that the domain is not in the aligned region.

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