DRSC/TRiP Functional Genomics Resources

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Protein Alignment cpo and rbpms2

DIOPT Version :10

Sequence 1:NP_001014632.3 Gene:cpo / 45840 FlyBaseID:FBgn0263995 Length:962 Species:Drosophila melanogaster
Sequence 2:XP_002938920.1 Gene:rbpms2 / 100038109 XenbaseID:XB-GENE-490341 Length:198 Species:Xenopus tropicalis


Alignment Length:184 Identity:95/184 - (51%)
Similarity:113/184 - (61%) Gaps:31/184 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   433 NTASNEEEVRTLFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTASPVGFVTFHTRAGA 497
            |..:.|||||||||||||:|.||||||||||.::||||||:|:|||     .|||||||..||||
 Frog    11 NNNNIEEEVRTLFVSGLPIDIKPRELYLLFRPFKGYEGSLIKLTSK-----QPVGFVTFDNRAGA 70

  Fly   498 EAAKQDLQGVRFDPDMPQTIRLEFAKSNTKVSKPKPQPNTATTASHPAL--------MHPLTGHL 554
            ||||..|.|:||||:.|||:||||||:|||::|.|.......|..||||        .:.||   
 Frog    71 EAAKNALNGIRFDPENPQTLRLEFAKANTKMAKNKLMATPNPTNLHPALGAHFIARDPYDLT--- 132

  Fly   555 GGPFFPGGPELW-HHPLAYSAAAAAELPGAAALQHATLVHP-------ALHPQV 600
            |....|..||.| .:|| |:|..|..:|      ||...:|       |||.|:
 Frog   133 GAALIPASPEAWAPYPL-YTAELAPAIP------HAAFTYPAAAAAAAALHAQM 179

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cpoNP_001014632.3 RRM_cpo 441..523 CDD:410085 59/81 (73%)
RRM_scw1_like 712..819 CDD:409691
rbpms2XP_002938920.1 RRM_RBPMS2 19..94 CDD:410084 57/79 (72%)
Blue background indicates that the domain is not in the aligned region.

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