DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bel and Ddx43

DIOPT Version :10

Sequence 1:NP_001262379.1 Gene:bel / 45826 FlyBaseID:FBgn0263231 Length:801 Species:Drosophila melanogaster
Sequence 2:NP_001414562.1 Gene:Ddx43 / 682138 RGDID:1586947 Length:646 Species:Rattus norvegicus


Alignment Length:668 Identity:196/668 - (29%)
Similarity:306/668 - (45%) Gaps:128/668 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    88 RDPQQSRGGGGEYRRGGGGGGRGFNRQSGDYGYGSGGGGRRGGGGRFEDNYNGGEFD--SRRGGD 150
            |:...:....|...|....|.||..|.:.:.|...|..|.||.||.:.:.....|..  |||...
  Rat     4 RESAANASSSGVASRRSSTGSRGAERTATEEGNRRGRVGSRGAGGGWREPAGAAEATAASRREPP 68

  Fly   151 WNRSGGGGGGGRGFGRGPS---------------YRGGG-------GGSGSNLNEQTAEDGQAQQ 193
            ..........|...|||.|               .:|..       |........:|..|...::
  Rat    69 LCFGVKNDVVGAVIGRGGSKIREIQNTTNTRIQVIKGNPEAEIKIFGNKAMQTKAKTVIDNVVKK 133

  Fly   194 QQ------------------------------QPRNDRWQEPERPAGFDGSEGGQSAGGNRSYNN 228
            ||                              ||..| |.:....|                   
  Rat   134 QQNYIPGHRVDIIAFQPTVGTDTSTSESVTDDQPLID-WDQIREDA------------------- 178

  Fly   229 RGERGGGGYNSRWKEGGGSNVDYTKLGARDE--------RLEVELFGVGNTGINFDKYEDIPVEA 285
                      .:|::...:::...|.....|        :::::.:...|..|..|..:|     
  Rat   179 ----------LKWEKKKWADLPPIKKNFYIESATTSSMSQVQIDNWRKENFNITCDDLKD----- 228

  Fly   286 TGQNVP-PN-ITSFDDV--QLTEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKT 346
             |:..| || |..|:|.  ...|:: .|:..|.:.||||:|..|.||::.|.||:..||||:|||
  Rat   229 -GEKRPIPNPICKFEDAFHSYPEVM-ENIKRAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKT 291

  Fly   347 AAFLVPILNQMYELG--HVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRP 409
            .::|:|        |  |:......|:   ::..|..|||.||||||.|:..|..|::| ..::.
  Rat   292 LSYLMP--------GFIHLDSQPLARE---QRNGPGMLVLTPTRELALQVEAECSKYSY-GDLKS 344

  Fly   410 AVLYGGNNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIR 474
            ..:|||.:...|::::.:|..:|:||||||.|:.....|.|:::.:|||||||:||||||||||.
  Rat   345 VCVYGGGDRDGQIQDVSKGVDIIIATPGRLNDLQMNNFVNLKSVTYLVLDEADKMLDMGFEPQIM 409

  Fly   475 RIVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTS-ENITQTILWVYEPD 538
            :|:  |::.|  .|||:|.|||:|..::.||..:|...:.:.||.:...: ..:.|.|:...|.:
  Rat   410 KIL--LDVRP--DRQTIMTSATWPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVKQNIIITTEEE 470

  Fly   539 KRSYLLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALR 603
            ||:::...|.::.     .||.: ::||..|..||.|...|...:..|.|:||:|.|.:||:||.
  Rat   471 KRTHIQTFLENMS-----PKDKV-IVFVSRKAVADHLSSDLILRHISVESLHGNREQSDREKALE 529

  Fly   604 CFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEKNR 668
            .|::|...||:||.:|:||||:..:.||.|:|.|.::||||||:|||||.|..|::.:.....:.
  Rat   530 NFKTGKVRILIATDLASRGLDVHDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGMSITLITRNDW 594

  Fly   669 NICSDLLELLIETKQEIP 686
            .|.::|:.:|....|.||
  Rat   595 RIATELINILERANQNIP 612

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
belNP_001262379.1 DEADc_DDX3 275..522 CDD:350809 97/252 (38%)
SF2_C_DEAD 527..663 CDD:350174 54/135 (40%)
Ddx43NP_001414562.1 None

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